Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001661215.1_202016-05-11] 10,694 sequences; 59,384,214 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq9840 125 8e-24 seq2021 113 5e-20 seq9278 104 3e-17 seq9205 104 3e-17 seq9206 93.3 5e-14 seq451 89.7 6e-13 seq106 86.0 7e-12 >seq9840 Length=425 Score = 125 bits (138), Expect = 8e-24 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||| || || ||||| || |||| ||||| |||||||||||||| Sbjct 225 CTCCTTCTGGATGTTGTAATCAGAAAGAGTTCGACCGTCCTCGAGTTGCTTGCCGGCGAA 166 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||| |||| || | || |||||| ||| ||||| ||||| | Sbjct 165 AATTAGGCGCTGCTGATCGGGAGGAATGCCCTCCTTATCCTGAATCTTTGCCTTGACATT 106 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | |||||| || ||||| |||| |||||| || ||||| |||| || || || Sbjct 105 GTCGATGGTGTCGGAAGACTCCACTTCCAGCGTGATCGTCTTGCCGGTCAATGTCTTCAC 46 Query 46582 AAAGATTTGCAT 46593 ||| || ||||| Sbjct 45 AAAAATCTGCAT 34 >seq2021 Length=7336 Score = 113 bits (124), Expect = 5e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 46397 GTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCG 46456 || |||||||| || |||||||| || || | ||| ||| |||| || | |||||| ||| Sbjct 254 GTGCTCTCCTTCTGAATATTGTAATCCGACAAAGTACGCCCGTCCTCCAACTGCTTCCCG 195 Query 46457 GCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTG 46516 || || || | |||||||||||| | || | || |||||| ||| |||||| ||| Sbjct 194 GCAAAGATGAGGCGCTGCTGGTCAGGAGGAATGCCCTCCTTATCCTGAATCTTCGCCTTC 135 Query 46517 AGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTT 46576 | | | | ||| || || || || |||| |||||| || || ||||||| || Sbjct 134 ACATTGTCAATCGTATCCGAAGACTCGACTTCCAACGTGATCGTCTTTCCCGTCAAAGTC 75 Query 46577 TTAACAAAGATTTGCAT 46593 || || ||||||||||| Sbjct 74 TTCACGAAGATTTGCAT 58 >seq9278 Length=305 Score = 104 bits (114), Expect = 3e-17 Identities = 95/119 (80%), Gaps = 1/119 (1%) Strand=Plus/Plus Query 46384 CACC-AGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGT 46442 |||| ||||||| ||| |||||| || || || || ||||| ||||||||| |||| | Sbjct 185 CACCGAGATGCAGAGTAGACTCCTTCTGAATGTTATAATCGGAAAGAGTGCGCCCGTCCT 244 Query 46443 CGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCC 46501 ||||||||||||| || || ||||| ||||| ||||| | || | || |||||||||| Sbjct 245 CGAGCTGCTTGCCCGCAAAGATCAAACGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCC 303 >seq9205 Length=338 Score = 104 bits (114), Expect = 3e-17 Identities = 95/119 (80%), Gaps = 1/119 (1%) Strand=Plus/Plus Query 46384 CACC-AGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGT 46442 |||| ||||||| ||| |||||| || || || || ||||| |||||||| |||| | Sbjct 218 CACCGAGATGCAGAGTAGACTCCTTCTGAATGTTATAATCGGAAAGAGTGCGGCCGTCCT 277 Query 46443 CGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCC 46501 ||||||||||||| ||||| ||||| ||||||||||| | || | | |||||||||| Sbjct 278 CGAGCTGCTTGCCCGCGAAGATCAAACGCTGCTGGTCCGGGGGAATACCCTCCTTGTCC 336 >seq9206 Length=299 Score = 93.3 bits (102), Expect = 5e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || || ||||| || || |||||||| | || || |||||||| |||||||| Sbjct 159 CTCCTTCTGAATGTTGTAATCAGAAAGAGTGCGACCATCTTCCAGCTGCTTTCCGGCGAA 100 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGA 46517 ||||||||||| ||||| | || | | |||||||||| |||||| ||||| Sbjct 99 GATCAAGCGCTGTTGGTCAGGGGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGA 44 >seq451 Length=165701 Score = 89.7 bits (98), Expect = 6e-13 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||| |||||||| |||| |||||||||||||| || || Sbjct 12671 CTCCTTCTGGATGTTGTAGTCGCTGAGAGTGCGGCCGTCCTCGAGCTGCTTGCCAGCAAA 12612 Query 46462 TATCAAGCGCTGCTGGTCGGCCGG 46485 |||| |||||| ||||||| ||| Sbjct 12611 GATCAGGCGCTGTTGGTCGGGCGG 12588 >seq106 Length=225739 Score = 86.0 bits (94), Expect = 7e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||||||||| ||||||||| || ||||| | || || ||||||||||||||||| Sbjct 79711 CTCCTTTTGGATGTTGTAGTCGCTGAGGGTGCGACCATCCTCCAGCTGCTTGCCGGCGAA 79770 Query 46462 TATCAAGCGCTGCTGGTCGG 46481 |||| ||||||||||||| Sbjct 79771 GATCAGACGCTGCTGGTCGG 79790 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565162841756880