Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001661215.1_202016-05-11] 10,694 sequences; 59,384,214 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq32 259 5e-64 seq247 138 1e-27 seq106 100 3e-16 seq451 95.1 1e-14 seq9840 86.0 6e-12 seq9278 84.2 2e-11 >seq32 Length=1481398 Score = 259 bits (286), Expect = 5e-64 Identities = 392/554 (71%), Gaps = 13/554 (2%) Strand=Plus/Plus Query 132894 GCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAA 132953 ||| ||||||||| |||| || ||||| | | |||||| || ||| ||||||| Sbjct 1082046 GCATGCAAAGTCGGTGTGCATTCCTTCGTCGCGGCTAATGAGCTCATTGGAAAAAGTCAG 1082105 Query 132954 GCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAA 133013 ||| ||||| | ||| || || || | ||| || |||| |||||| |||||| ||||| Sbjct 1082106 GCCAGGCATCAAGCCTCGCTTCTTCATCCAGAAGATGGACGCGAAAGAGCCCGAGAAGAA 1082165 Query 133014 GACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGC 133073 || ||| || || || || || ||||||| ||| || || || || | | | || Sbjct 1082166 GATGCCTTCAACAGCAGCAAACGCCACCAAGCGTTCACCAAAAGTTGACCGTCGGTCGGA 1082225 Query 133074 GATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTT 133133 ||||||| ||| ||||| || ||||| ||||| ||||| || || || | ||||| Sbjct 1082226 GATCCAGTTCAGTGCCCAGTCTGCCTTGCGCTTGACACACGGAATGGTCTCCACGGCGTC 1082285 Query 133134 CAACAAACGGAGTTTCTCTTCCGAGGAACGCACGT-----AGGTGTCGATGAGGGTCGAA 133188 || || | | | | | | || | | || | | ||||||||||||| |||| Sbjct 1082286 GAA--AAGGTACT--CGCGTTCG-GCAGCGTCCTTGATATAGGTGTCGATGAGAAGCGAA 1082340 Query 133189 TACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCG 133248 ||| | || ||||| | ||||||||| |||||| ||||| || || || || |||||| Sbjct 1082341 TACGTCTCTGAGTGAATGTTCTCCATCATGATTTGGAAGCCATAGAAACATCGAGCCTCG 1082400 Query 133249 ACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTG 133308 | || || || || | | || |||||||| || || |||||||| || || || | Sbjct 1082401 GCAACTTGGACCTCGTTGGAAAAGCGCTCGACAAGGTTCTCGTTGACAATACCATCCGAG 1082460 Query 133309 GCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCG---C 133365 || ||||| || || || || || |||||||||||||||||||||||| | ||| Sbjct 1082461 GCTGCGAAGAAAGCGAGGACATGGGAGATGAAATGGCGCTCGTTGTCGTTAAGGCGGGTG 1082520 Query 133366 TCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCG 133425 |||||| | | || || || ||||||| ||||| | ||||||||||||||||| Sbjct 1082521 GTCCAGTCATGAATATCTTTCGAGAGGTCCATTTCCTCTGCAGTCCAAAACGACGCCTCA 1082580 Query 133426 GCTTTTTTGTACAT 133439 || || |||||||| Sbjct 1082581 GCCTTCTTGTACAT 1082594 Score = 152 bits (168), Expect = 5e-32 Identities = 376/563 (67%), Gaps = 17/563 (3%) Strand=Plus/Minus Query 132884 TGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGC 132943 |||||| | || || || ||| |||||||||||||| | ||| || || ||| Sbjct 1084279 TGAACAATAGACATGCGAAATCGGTGTGCAAGCCCTCGTCTCGACTAATAAGCTCATTGG 1084220 Query 132944 TGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGC 133003 || |||| ||| ||||| || || ||||| |||| ||| ||||| | ||| |||| | Sbjct 1084219 AAAATGTCAGGCCAGGCATAAGACCACGTTTCTTGATCCAGAATATTGAGGC-AAACGAC 1084161 Query 133004 CC-GAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCT 133062 || |||||||| | || ||||| || || || || || || || || |||| || | Sbjct 1084160 CCAGAAAAGAATATCCCTTCGACAGCAGCAAAGGCAACTAGACGTTCCGCGAAGGTTGAA 1084101 Query 133063 TCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTT 133122 | |||| | ||||| || ||||| || || || |||| ||| || || || Sbjct 1084100 TGTTTGTCTGAAATCCATTTTAGAGCCCAATCAGCTTTGCGCTTGATGCAAGGAATGGTG 1084041 Query 133123 TCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGC--ACGTAGGTGTCGATGA 133180 || ||||||| || || | | | || | | ||| | | |||| ||||| | Sbjct 1084040 TCTATGGCGTCGAA--AAGGTGGGCCCGCTCCTGCGGATCCTTGATGTAGCCATCGATAA 1083983 Query 133181 GGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACC 133240 | ||||||| |||| || || | |||||||| |||||||||||| || ||| | | Sbjct 1083982 GCAACGAATACGTTTCGGAATGGATATTCTCCATCATGATTTGAAAGCCATAGAAGGAAC 1083923 Query 133241 GCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGC 133300 |||||||| ||||||||||| | || | ||||| || || ||||| || |||| Sbjct 1083922 GCGCCTCGGGTACCTGCACTTCACCACAAAACCTTTCGACGAGGTTCTCGTTTACAATGC 1083863 Query 133301 CGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTC------GTTGT 133354 | || ||| || || || || || || ||| || |||| ||||| |||| Sbjct 1083862 CATCTGAGGCCGCAAAGAAAGCAAGAACATGCGATATAAAATACCGCTCATCATGGTTGA 1083803 Query 133355 CGTTCAAGCGCTCCCAGTCGCGCG-TGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAA 133413 || ||| | |||||| | || ||| | ||| ||||| | || || | ||||| Sbjct 1083802 GATTGAAG---TTCCAGTC-CACGAAGTCATGGGAAAGGTCAAGTTCTTCAGCTGTCCAG 1083747 Query 133414 AACGACGCCTCGGCTTTTTTGTA 133436 || || || | ||||| ||||| Sbjct 1083746 AATGAGGCTTGAGCTTTCTTGTA 1083724 >seq247 Length=45445 Score = 138 bits (152), Expect = 1e-27 Identities = 377/565 (67%), Gaps = 22/565 (4%) Strand=Plus/Plus Query 132895 CAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAG 132954 || |||||||| ||| | || ||||| ||| || |||||||| ||||| ||| Sbjct 37333 CAGGCAAAGTCCGTATGAAGTCCTTCGTCTCTGCTGATTAGTTCGTTCGAAAAAGTTAAG 37392 Query 132955 CCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAG 133014 || ||||| || || ||||| || | |||||| | || || || || || ||||| Sbjct 37393 CCTGGCATAAGCCC-CGTTTCTTAATCCAAAAGACTGCTGCAAACGATCCGGAGAAGAAA 37451 Query 133015 ACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCG 133074 | ||| || || ||| || || |||| || ||| ||| | ||| || | | Sbjct 37452 ATGCCTTCCACACACGCAAAGGCAACCAAACGTTCGG-GAAAGAGGCGGATTGGATCATT 37510 Query 133075 A-TCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTT 133133 | |||| || ||||| | || ||||| | || || || || || ||||| ||||| Sbjct 37511 AATCCATTTCAATGCCCAGTTCGCTTTTTCCTGGATACAGGGAATAGTCTCGATAGCGTT 37570 Query 133134 CAACAAACGGAGTTTCTCTTCCGAGGA---ACGCACGTAGGTGTCGATGAGGGTCGAATA 133190 || | |||| | ||||| | ||| | ||||| || || | ||||||||| Sbjct 37571 GAAGAGACGGGC---CCGTTCCGTGCTGTCACGAATATAGGTATCTATCAAGGTCGAATA 37627 Query 133191 CATTTCCGAGTGTACGTTCTCCATGGC-GATTTGAAAGCCGTAAAAGCACCGCGCCTCGA 133249 || ||||| || || || || |||| |||| ||||||||| || ||||| Sbjct 37628 TGCCTCGGAGTGAACATTTTCGATCATTGATTGGAAA-CCGTAAAAGGCACGGGCCTC-- 37684 Query 133250 CCACCTGC--ACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCT 133307 ||| | | ||||||| ||| || || | || ||||||||| ||||||||||| Sbjct 37685 CCAGGGACCGATCTCTTGAGAGAACCGTTCCAGCAAATTTTCGTTAACGATGCCGTCCGA 37744 Query 133308 GGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCG--- 133364 ||| ||||| ||||||||||| || | ||||| | || | || || || Sbjct 37745 GGCTGCGAAGAAGGCCAGCACATGTGACAAAAAATGTCTGTCATCGTTCGACAGACGGTT 37804 Query 133365 CTCCCAGTCGCGCGTGTCCTTGGAC--AGGTCCACCTCCTCGACGGTCCAAAACGACGCC 133422 ||||||||||| | || || || || || | |||||| |||||||| || |||||| Sbjct 37805 CTCCCAGTCGCCCAAATC--TGAACGAAGATCAAGCTCCTCCACGGTCCAGAATGACGCC 37862 Query 133423 TCGGCTTTTTTGTACATACTCCACA 133447 || || || || ||||| ||||| Sbjct 37863 TCCGCCTTCTTATACATCTGCCACA 37887 >seq106 Length=225739 Score = 100 bits (110), Expect = 3e-16 Identities = 91/115 (79%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 38356 CCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACG 38415 ||||||| ||||| || || | ||| ||||| |||||||| || | |||||||||| || Sbjct 79790 CCGACCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGTCGCACCCTCAGCG 79731 Query 38416 ACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||||||||||||| | || || || ||||| || ||| || | || || Sbjct 79730 ACTACAACATCCAAAAGGAGTCCACTCTCCACTTGGTCCTTCGTCTGCGTGGTGG 79676 >seq451 Length=165701 Score = 95.1 bits (104), Expect = 1e-14 Identities = 87/109 (80%), Gaps = 1/109 (1%) Strand=Plus/Plus Query 38351 TCCCGCC-GACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCC 38409 ||||||| ||||||||||| || || | || ||||| ||||| || |||| ||||| | Sbjct 12586 TCCCGCCCGACCAACAGCGCCTGATCTTTGCTGGCAAGCAGCTCGAGGACGGCCGCACTC 12645 Query 38410 TCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||| ||||||||||||||| ||||| |||| || || ||||| || || Sbjct 12646 TCAGCGACTACAACATCCAGAAGGAGTCGACACTTCACTTGGTCCTACG 12694 >seq9840 Length=425 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || | || ||||| || ||||| | || || ||| | || Sbjct 34 ATGCAGATTTTTGTGAAGACATTGACCGGCAAGACGATCACGCTGGAAGTGGAGTCTTCC 93 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | ||| || | || || ||||| ||||| |||| || Sbjct 94 GACACCATCGACAATGTCAAGGCAAAGATTCAGGATAAGGAGGGCATTCCTCCCGATCAG 153 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || |||| ||| ||||| || || || |||| || || || || |||||| Sbjct 154 CAGCGCCTAATTTTCGCCGGCAAGCAACTCGAGGACGGTCGAACTCTTTCTGATTACAAC 213 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||| ||||| | ||||| ||| | || || || Sbjct 214 ATCCAGAAGGAGTCAACGCTCCATCTCGTTCTTCG 248 >seq9278 Length=305 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396 ||||| ||||| |||||| | ||||||||||| | || | |||||||| ||||| || Sbjct 302 GACAAGGAGGGCATTCCCCCGGACCAACAGCGTTTGATCTTTGCGGGCAAGCAGCTCGAG 243 Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447 |||| |||||| || ||| || ||||| || ||||| | || |||||| Sbjct 242 GACGGGCGCACTCTTTCCGATTATAACATTCAGAAGGAGTCTACTCTGCAT 192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500105939400960