Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001661215.1_202016-05-11] 10,694 sequences; 59,384,214 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq1000 118 1e-21 seq179 100 4e-16 seq4743 98.7 1e-15 seq4742 86.0 8e-12 seq3003 84.2 3e-11 >seq1000 Length=18647 Score = 118 bits (130), Expect = 1e-21 Identities = 163/223 (73%), Gaps = 4/223 (2%) Strand=Plus/Plus Query 102099 GCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT 102158 || ||| |||| || || || | | ||||| || || ||||| |||| ||| || | Sbjct 12166 GCTATCGAAACTGTGCCTTGCGTGAAGAAGAAGGCAGAATGGGCGATGACATGGATT-AC 12224 Query 102159 ACAAAG-TCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTT 102217 | | ||||| || || |||||||| || || |||||| | |||||||| || || || Sbjct 12225 CGACCGCTCGCGGTCGTTCGCTGAGCGTCTTTTGGCATTTTCCTGTGTTGAAGGCATTTT 12284 Query 102218 CTTCTCTGGTTCCTTCTGC-GCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTC 102276 ||| || || || || ||| ||||| | |||| ||||||||||||| |||||||| || Sbjct 12285 CTTTTCCGGCTCATT-TGCAGCTATCTTTTGGATCAAGAAGCGAGGGCTCATGCCTGGAT 12343 Query 102277 TCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCA 102319 | |||||||| || | ||| | |||||||||| ||||| Sbjct 12344 TGACTTTCTCCAATGAATTGATCAGTTGTGACGAGGGCCTCCA 12386 >seq179 Length=47363 Score = 100 bits (110), Expect = 4e-16 Identities = 136/183 (74%), Gaps = 9/183 (5%) Strand=Plus/Plus Query 102122 TCAAAAGAAAG-CGGATTGGGCTATGAAGTGGTTTGATACAAAGTC-GCGTT--CCTTTG 102177 ||||||||||| |||||||||| |||| ||| | || | | || ||| | |||||| Sbjct 9148 TCAAAAGAAAGGCGGATTGGGCATTGAAATGGATCGA---AGATTCCGCGGTTGCCTTTG 9204 Query 102178 CTGAGCGAC-TCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGC 102236 ||| || || | || ||||| || || || || ||||| || |||||||||||| Sbjct 9205 GA-AGCCACCTCGTAGCCTTTGCCTGCGTGGAAGGCATCTTTTTTTCTGGTTCCTTCGCG 9263 Query 102237 GCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTT 102296 || |||| |||||| ||||| || ||| | |||||||| | |||||||| |||||| Sbjct 9264 GCCATTTTTTGGCTGAAGAAACGTGGTGTGATGCCAGGATTGACTTTCTCCAATGAGCTT 9323 Query 102297 ATC 102299 ||| Sbjct 9324 ATC 9326 >seq4743 Length=11411 Score = 98.7 bits (108), Expect = 1e-15 Identities = 204/295 (69%), Gaps = 14/295 (5%) Strand=Plus/Plus Query 176764 ATCCGTCATGATCATGAGACGACCATACCG-AAGCTC--GGAAACATCTTGATAGTCCTT 176820 ||| ||||| |||||||| ||||| ||||| |||||| || | || || |||||||| Sbjct 7358 ATCAGTCATAATCATGAGTCGACCGTACCGCAAGCTCATGGTAT--TCGTG-TAGTCCTT 7414 Query 176821 ACCCTGTTGAAGACCCAAGATCTTCTTGAGATCGTTGAACTCTTGGT--TTGATG-TGAG 176877 || || || |||| ||||||||||| || | || |||| || || ||| | | Sbjct 7415 GTTATGCTGCAGCCCCATGATCTTCTTGATATTCTGGATTTCTTCGTTCTTCATGATTTG 7474 Query 176878 CT-GTGTGACAGAGGCATCACGAACATTCTTACACTTCCCACGAAGAGGGAAGACACCGT 176936 || |||| | || || |||||||| |||| || ||||| ||||| |||||| Sbjct 7475 CTCGTGTCGC----GCCTCGCGAACATTGAGCAACTTGCCGCGAAGGGGGAACACACCGA 7530 Query 176937 AGTGATCGCGACCAACCACAGAGAGACCCGCAACCGCGAGCGTTTTCGCAGAATCACCCT 176996 ||| || | ||||| || |||||| || ||||| || | ||| || || || || | Sbjct 7531 AGTTGTCTCTGCCAACAACTCCGAGACCAGCCACCGCCAGGGCTTTAGCGGAGTCTCCTT 7590 Query 176997 CTGTCACGATGAGTGTACACTTGCCAGATTGTGCCGTACCCGCCTTGTTCGCATC 177051 | || | || || ||||| || | ||| || ||||| ||||| ||||| Sbjct 7591 CGGTGAGAATCAGGGTACAGTTCTTCGCGTGTTTGGTTCCCGCGTTGTTGGCATC 7645 >seq4742 Length=7625 Score = 86.0 bits (94), Expect = 8e-12 Identities = 201/295 (68%), Gaps = 14/295 (5%) Strand=Plus/Plus Query 176764 ATCCGTCATGATCATGAGACGACCATACCG-AAGCTC--GGAAACATCTTGATAGTCCTT 176820 ||| ||||| |||||||| || |||||||| |||||| || | || || |||||||| Sbjct 2290 ATCAGTCATAATCATGAGTCGCCCATACCGCAAGCTCATGGTAT--TCGTG-TAGTCCTT 2346 Query 176821 ACCCTGTTGAAGACCCAAGATCTTCTTGAGATCGTTGAACTCTTGGT--TTGATG-TGAG 176877 || || || |||| ||||||||||| || | || |||| || || ||| | | Sbjct 2347 GTTATGCTGCAGCCCCATGATCTTCTTGATATTCTGGATTTCTTCGTTCTTCATGATTTG 2406 Query 176878 CT-GTGTGACAGAGGCATCACGAACATTCTTACACTTCCCACGAAGAGGGAAGACACCGT 176936 || ||| | || ||||| || || |||| || ||||| ||||| |||||| Sbjct 2407 CTCATGTCGC----GCCTCACGGACGTTAAGCAACTTGCCGCGAAGGGGGAACACACCGA 2462 Query 176937 AGTGATCGCGACCAACCACAGAGAGACCCGCAACCGCGAGCGTTTTCGCAGAATCACCCT 176996 ||| || | ||||| || |||||| || ||||| || | ||| || || || || | Sbjct 2463 AGTTGTCTCTGCCAACAACTCCGAGACCAGCCACCGCCAGGGCTTTGGCGGAGTCTCCTT 2522 Query 176997 CTGTCACGATGAGTGTACACTTGCCAGATTGTGCCGTACCCGCCTTGTTCGCATC 177051 | || | || || || || || | ||| || ||||| ||||| ||||| Sbjct 2523 CGGTGAGAATCAGGGTGCAGTTCTTCGCGTGTTTGGTTCCCGCATTGTTGGCATC 2577 >seq3003 Length=7408 Score = 84.2 bits (92), Expect = 3e-11 Identities = 159/230 (69%), Gaps = 3/230 (1%) Strand=Plus/Plus Query 13597 TCTATCAAGCCTCTTCATCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAACGAGG 13656 |||| ||||| || |||| ||| ||| || ||||| ||| |||| || | |||| Sbjct 5378 TCTACCAAGCGTCCACATCCGAGCTGTACGGCAAGGTCGTCGAGACACCGCAGAGCGAGA 5437 Query 13657 AGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTGGCTCG 13716 ||| ||||||||||| ||||| |||||| | | ||| | || | ||| ||| Sbjct 5438 CGACGCCCTTCTACCCGCGCTCTCCCTACGGCTGCGCCAAGCTCTACGCCTACTGGATCG 5497 Query 13717 TAAAGAATTACCGCGAGTCTTACGGACTGTTTGCATGCTCCGGAATCCTCTTCAACCATG 13776 | || ||||||||| | || || |||| || ||| || ||||| |||||||||| Sbjct 5498 TGGTCAACTACCGCGAGGCCTATGGCATGTTCGCGTGCAATGGGATCCTGTTCAACCATG 5557 Query 13777 AATCACCGAGACGAGGTGCAGAC-TTTGTGACCATGAAGATTACCGAGGG 13825 | || | || || | ||| || ||||| | |||||||| |||||| Sbjct 5558 AGAGTCCCCGCCG-GGGCCGGACATTCGTGACGAGGAAGATTA-CGAGGG 5605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620659422259680