Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001661215.1_202016-05-11] 10,694 sequences; 59,384,214 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq6350 96.9 4e-15 seq1000 93.3 5e-14 seq434 93.3 5e-14 >seq6350 Length=1587 Score = 96.9 bits (106), Expect = 4e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 11761 CCAACACCTACGAACATCTCAACGAAGTTTGCGGCAGAACACTGA-ATGAAGGGAACATT 11819 ||||| || || |||||||| ||||| | | | |||| || || | ||| || || Sbjct 1046 CCAACTCCAACAAACATCTCGACGAACTCAGAGCCAGAT-ACGGACAGGAATGGCACGGA 1104 Query 11820 AGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAG 11879 | || ||||| | || ||||||||||| |||||||| || |||| |||| ||| Sbjct 1105 GGCTTCGCCAGCAGTTGCCTTCGCGAGGAGAGTTTTACCCGTGCCCGGTGGTCCAGAGAG 1164 Query 11880 AAGGGCGCCACGGGGGATCTTGGCACCACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAA 11939 || ||||||||| |||||||||||||| || || | |||||| ||||||||| Sbjct 1165 AATGGCGCCACGAGGGATCTTGGCACCTAATCTCTCATATTGGGCAGGCTCCTTGAGGAA 1224 Query 11940 GTCCACAATCTCCTCAAGTTCCTCCTTGGC 11969 | || | |||| || || |||||||| Sbjct 1225 TTTAACGAACTCCATAATCTCTTCCTTGGC 1254 >seq1000 Length=18647 Score = 93.3 bits (102), Expect = 5e-14 Identities = 133/187 (71%), Gaps = 3/187 (2%) Strand=Plus/Minus Query 119552 TCCAGGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAA 119611 |||||||||||| |||| ||||| | ||||||||| || ||| || |||||||| Sbjct 12342 TCCAGGCATGAGCCCTCGCTTCTTGATCCAAAAGATAGCTGCAAATGAGCCGGAAAAGAA 12283 Query 119612 GATGCCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGACTTGTCG-- 119669 ||||| || ||||||| || || || ||||||||||| || | || || |||| Sbjct 12282 AATGCCTTCAACACAGGAAAATGCCAAAAGACGCTCAGCGAACGACCGCGAGCGGTCGGT 12223 Query 119670 -AACCACTTGAGAGCCCAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTC 119728 | ||| | | ||||| | ||||| || | ||| || ||||||| ||| || | Sbjct 12222 AATCCATGTCATCGCCCATTCTGCCTTCTTCTTCACGCAAGGCACAGTTTCGATAGCGTT 12163 Query 119729 GAAAAGT 119735 ||||||| Sbjct 12162 GAAAAGT 12156 >seq434 Length=244965 Score = 93.3 bits (102), Expect = 5e-14 Identities = 199/293 (68%), Gaps = 6/293 (2%) Strand=Plus/Plus Query 110104 TCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCA 110163 || || |||||||| ||||||| || ||||| ||||| |||||| || || ||||| Sbjct 86691 TCGGCCAGACCCTGCACACCGATTCCGATGGGTCGATGGCGCATGTTTGACCGCCGAGCC 86750 Query 110164 GTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTC 110223 || || || ||||| ||||||||| ||||| ||||| | ||| || Sbjct 86751 TCCGGAACAGGATAGTAGTTGACGTCGATGACTCGATTCAGATTGAAGGCAACAACTTTG 86810 Query 110224 GTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTATTGACATATTTGGGG 110283 |||| || ||||| || | | | ||| ||| ||| || | || || || ||||| Sbjct 86811 GTGACATCGTGGAGCTTCTTAAAGTTGAAT-TTTCCGT-TCGTGAT-GA---ATGTGGGG 86864 Query 110284 AGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATT 110343 ||||| | ||| ||||| || || || | || ||||| | || ||||| | ||| Sbjct 86865 AGAGCCAGAGAGGCAAGGTTACAAACGGCGGTTTCGTCAGGGGAGGAATATTCGATGATT 86924 Query 110344 TCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTT 110396 || || || | || || || ||| ||| | |||||||||||||||||| Sbjct 86925 TCTGTGCAGAGATTCGAGGATTTGATGGTACCAAGGTTCTTCTGATTCGATTT 86977 Score = 86.0 bits (94), Expect = 7e-12 Identities = 157/225 (70%), Gaps = 9/225 (4%) Strand=Plus/Plus Query 110401 TTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATG 110460 ||||| |||||||| || |||||| | ||| ||||||||| |||| | || ||| || Sbjct 87031 TTGCA-GCATCCTTGTATAGCATGAAAGGGCCACCAGTTTCAATCTGGGCCTCGAGGATC 87089 Query 110461 GCCTTCCATACATCGGCGGCGGGGACAGT-TGCGTTAGCGAGACCTTCCTCCTCGTACTT 110519 || | ||| | | ||| ||||| || | | || | | | ||||| |||||||| Sbjct 87090 GCATACCACAGCTTTTGGGCCGGGACGGTCTTCCTTTG-GCGGCCTTCTCGTTCGTACTT 87148 Query 110520 GGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTCGGG 110579 ||| ||||| |||||||||| | ||||| || ||| ||| || ||| | | || Sbjct 87149 GGTAAACAAGGCCTCAAATTCATCTCCGTGAACCTCATGAAGTCCGGGCGCTTCATTAGG 87208 Query 110580 ACAGAAGAGGGACCAATTTCCACCCT---CCTCAACCCTCTTCAT 110621 ||||| || ||||||| || | | | || ||||||||||| Sbjct 87209 GCAGAAAAGAGACCAAT---CAGCGTTGGCTTCGACCCTCTTCAT 87250 Score = 86.0 bits (94), Expect = 7e-12 Identities = 184/275 (67%), Gaps = 0/275 (0%) Strand=Plus/Plus Query 110861 TGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCAC 110920 ||||||||||| ||||| | | ||| || || || ||| || || || |||| Sbjct 87600 TGGCACGAATGCAATGGATGTTGAGACCGATTCCTCCAGCCGTTTTGCTGATCATGGCAC 87659 Query 110921 ACTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGC 110980 | | | | ||| | |||||||| |||||||| || | || || | || |||| Sbjct 87660 AACTTTTCAAGGTATCGTAAATACCCTCAATCGAGTCATCTTTCATGCAGACAAGGAAGC 87719 Query 110981 AAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGA 111040 | || | ||| ||| || ||||| |||||||| ||||| |||| ||||| ||| Sbjct 87720 AGGAGCTGAGCTGGGGATTGGGAGTTCCGGCATTGAAAAGTGTCGGTGATGCATGCGTGA 87779 Query 111041 ACAGACCTTGGGACATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACCGTGAA 111100 | ||| | |||||| |||||| || |||| | || ||| || |||| Sbjct 87780 AGTGACGCTCAGACATCAGGTTGTACGTCTCGATCACACGATCTATATCGGAGCCATGAA 87839 Query 111101 TACCAATGGCAACTCGCATGAACATATATTGAGGC 111135 |||||| |||||||||||| | ||| | ||| ||| Sbjct 87840 TACCAACGGCAACTCGCATAATCATGTGTTGTGGC 87874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588897268633200