Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001661215.1_202016-05-11] 10,694 sequences; 59,384,214 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq1000 131 2e-25 seq925 104 3e-17 seq247 104 3e-17 seq4743 82.4 9e-11 >seq1000 Length=18647 Score = 131 bits (144), Expect = 2e-25 Identities = 288/421 (68%), Gaps = 12/421 (3%) Strand=Plus/Minus Query 117286 TGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCC 117345 ||||| ||||| || | || | |||||| ||||| | || |||||||| || Sbjct 12386 TGGAGGCCCTCGTCACAACTGATCAATTCATTGGAGAAAGTCAATCCAGGCATGAGCCCT 12327 Query 117346 CGCTTCTTCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 |||||||| | |||| | ||||| ||| ||||| ||||| ||||| || || || ||||| Sbjct 12326 CGCTTCTTGATCCAAAAGATAGCTGCA-AATGAGCCGGAAAAGAAAATGCCTTCAACACA 12268 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGA-CTTTGTGTCAAACCATTTCATTG 117463 | ||| || ||||| ||||| ||||| || || || | | || || |||| |||| | Sbjct 12267 GGAAAATGCCAAAAGACGCTCAGCGAACGACCGCGAGCGGTCGGT-AATCCATGTCATCG 12209 Query 117464 CCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC-TTCAAA--TAACTGCT 117520 |||||| |||||||||| | || || ||||||| ||| || || ||| ||| || Sbjct 12208 CCCATTCTGCCTTCTTCTTCACGCAAGGCACAGTTTCGATAGCGTTGAAAAGTAAGGCCT 12149 Query 117521 TCTTTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTTCGCCATGAA 117580 ||| | | ||| | ||||| |||| || || || |||||||| ||||| Sbjct 12148 TCTCCTTGGG---ATCGGTGATGTAGGTGTCGATTAACAAGGAGTATGTTTCAGAATGAA 12092 Query 117581 CCATTTCATT-ATGGCATTGATATGCGTAGAATGAGCGCGCTTCGCTTATCTGCACTTCA 117639 | ||||| | ||| | | || | || ||||| | | ||||| || | || || Sbjct 12091 CATTTTCAATCATGACCTGGA-AGGCATAGAAAGCCCAAGCTTCTCTCGGCGAAACCTCC 12033 Query 117640 TCCGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAGAATGCC 117699 | || ||||| | | ||||| ||||||||||||||| | ||||| || ||| Sbjct 12032 TGAGCGAAATTTTCCAGCAAGTTCTCGTTGACAATTCCATCGGACGCCGCAAAAAAAGCC 11973 Query 117700 A 117700 | Sbjct 11972 A 11972 >seq925 Length=43645 Score = 104 bits (114), Expect = 3e-17 Identities = 102/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 ||| ||||||||||||||| ||||| || |||| ||| |||| |||||||| | ||| Sbjct 13699 GTGAAGACCCTCATCTCGGCTGATAAGCTCGTTTGCGAACGATAGTCCTGGCATCAAACC 13758 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 || |||||||||||| | || ||| |||||| ||||| ||||| || || || || || Sbjct 13759 CCTTTTCTTCAACCAAAAGATCGCGGCGAATGAGCCGGAAAAGAAAATCCCTTCTACGCA 13818 Query 117405 CGCAAACGCAAA 117416 || || || || Sbjct 13819 TGCGAAAGCCAA 13830 >seq247 Length=45445 Score = 104 bits (114), Expect = 3e-17 Identities = 170/238 (71%), Gaps = 9/238 (4%) Strand=Plus/Plus Query 117273 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCC 117332 |||||| ||| || || || || |||| | || ||||| || || || || ||| Sbjct 37335 GGCAAAGTCCGTATGAAGTCCTTCGTCTCTGCTGATTAGTTCGTTCGAAAAAGTTAAGCC 37394 Query 117333 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGA 117391 |||||| || ||||| ||||| | |||| | | || ||| || || ||||||||||| | Sbjct 37395 TGGCATAAG-CCCCGTTTCTTAATCCAAAAGACTGCTGCA-AACGATCCGGAGAAGAAAA 37452 Query 117392 TACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTC-- 117449 | || |||||||||||||| |||| | || |||| ||| ||| || ||| || Sbjct 37453 TGCCTTCCACACACGCAAAGGCAACCAAACGTTCGG-GAAAGAGGCGGA--TTGGATCAT 37509 Query 117450 -AAACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 117506 || |||||||| |||||| ||||| || | || ||||| || | ||| | ||| || Sbjct 37510 TAATCCATTTCAATGCCCAGTTCGCTTTTTCCTGGATACAGGGAATAGTCTCGATAGC 37567 >seq4743 Length=11411 Score = 82.4 bits (90), Expect = 9e-11 Identities = 178/260 (68%), Gaps = 10/260 (4%) Strand=Plus/Plus Query 169214 ATCTGTCATAATCATAAGACGACCATAGCG-AAGTTCAGAAACATCTTGGTAGTCTTTTC 169272 ||| ||||||||||| || ||||| || || ||| ||| || | |||||| || Sbjct 7358 ATCAGTCATAATCATGAGTCGACCGTACCGCAAGCTCATGGTATTCGT-GTAGTCCTTGT 7416 Query 169273 CTTGTTGAAGACCCAAGATCTTCTTGAGATCGTTGAACTCTTGGT--TTGATG-TGAGCT 169329 || || || |||| ||||||||||| || | || |||| || || ||| | ||| Sbjct 7417 TATGCTGCAGCCCCATGATCTTCTTGATATTCTGGATTTCTTCGTTCTTCATGATTTGCT 7476 Query 169330 -GTGCCACTGAAGCGTCGCGGACATTCTTACACTTCCCACGGAGAGGAAAGACGCCATAG 169388 ||| | | || ||||| ||||| |||| || || || || || || || || Sbjct 7477 CGTGTCGC----GCCTCGCGAACATTGAGCAACTTGCCGCGAAGGGGGAACACACCGAAG 7532 Query 169389 TGATCACGTCCAACGACGGAGAGACCCGCGACCGCAAGGGTTTTCGCTGAATCACCCTCC 169448 | || | ||||| || |||||| || ||||| |||| ||| || || || || || Sbjct 7533 TTGTCTCTGCCAACAACTCCGAGACCAGCCACCGCCAGGGCTTTAGCGGAGTCTCCTTCG 7592 Query 169449 GTGACAATGAGGGTACACTT 169468 |||| ||| |||||||| || Sbjct 7593 GTGAGAATCAGGGTACAGTT 7612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589901934316560