Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001661215.1_202016-05-11] 10,694 sequences; 59,384,214 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq32 179 4e-40 seq179 125 8e-24 seq1000 102 9e-17 seq247 89.7 6e-13 seq434 84.2 2e-11 >seq32 Length=1481398 Score = 179 bits (198), Expect = 4e-40 Identities = 382/568 (67%), Gaps = 7/568 (1%) Strand=Plus/Minus Query 18952 AACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAA 19011 |||| | |||||| ||||| || | |||||||||| ||| || | ||||| ||| Sbjct 1084277 AACAATAGACATGCGAAATCGGTGTGCAAGCCCTCGTCTCGACTAATAAGCTCATTGGAA 1084218 Query 19012 AATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCA 19071 ||||| | |||||||| || || | ||| || | ||||||||| || ||||| || ||| Sbjct 1084217 AATGTCAGGCCAGGCATAAGACCACGTTTCTTGATCCAGAATATTGAGGCAAACGACCCA 1084158 Query 19072 GAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCA 19131 ||||||||||| ||||| || || ||||| |||||||| | ||| | | | | || Sbjct 1084157 GAAAAGAATATCCCTTCGACAGCAGCAAAGGCAACTAGACGTTCCGCGAAGGTTGAATGT 1084098 Query 19132 TTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCT 19191 || | ||||||||| || ||||||||||| || || | || || || || ||| Sbjct 1084097 TTGTCTGAAATCCATTTTAGAGCCCAATCAGCTTTGCGCTTGATGCAAGGAATGGTGTCT 1084038 Query 19192 ATAGAATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAA 19251 || | | || || | ||||| | | ||| || | || |||| || | || Sbjct 1084037 ATGGCGTCGAAAAGGTGGGCCCGCTCCTGCGGATCCTTGATGTAGCCATCGATAAGCAAC 1083978 Query 19252 CTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCT 19311 ||| |||| ||||| ||||| || || || ||||| || || || | | || Sbjct 1083977 GAATACGTTTCGGAATGGATATTCTCCATCATGATTTGAAAGCCATAGAAGGAACGCGCC 1083918 Query 19312 TCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCA 19371 || | || ||| ||||||| |||||| |||||||| | || || || || || ||||| Sbjct 1083917 TCGGGTACCTGCACTTCACCACAAAACCTTTCGACGAGGTTCTCGTTTACAATGCCATCT 1083858 Query 19372 CTAGCTGCAAAAAATGCTAATACATGTTTAATAAAAT---GTTTTTCAT--CTGAGGTTA 19426 || ||||| || || | ||||| ||||||| | | |||| |||| || Sbjct 1083857 GAGGCCGCAAAGAAAGCAAGAACATGCGATATAAAATACCGCTCATCATGGTTGAGATTG 1083798 Query 19427 ATGTATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAG 19486 | | ||||| || | || | || | || | ||||||| ||||||| || || | Sbjct 1083797 AAG--TTCCAGTCCACGAAGTCATGGGAAAGGTCAAGTTCTTCAGCTGTCCAGAATGAGG 1083740 Query 19487 CCTCTGCTTTTTTATACATGTTCCATAT 19514 | | ||||| || || | | |||||| Sbjct 1083739 CTTGAGCTTTCTTGTAGAATTGCCATAT 1083712 Score = 122 bits (134), Expect = 1e-22 Identities = 365/559 (65%), Gaps = 7/559 (1%) Strand=Plus/Plus Query 18961 CATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAA 19020 |||||||| || || | ||| ||||| | || || | ||||| ||||| || | Sbjct 1082047 CATGCAAAGTCGGTGTGCATTCCTTCGTCGCGGCTAATGAGCTCATTGGAAAAAGTCAGG 1082106 Query 19021 CCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAAT 19080 |||||||||| |||| || || | |||||| || || || || || || || ||||| Sbjct 1082107 CCAGGCATCAAGCCTCGCTTCTTCATCCAGAAGATGGACGCGAAAGAGCCCGAGAAGAAG 1082166 Query 19081 ATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGA 19140 || ||||| || || ||||| || || | | ||| ||| || | | | | | | || Sbjct 1082167 ATGCCTTCAACAGCAGCAAACGCCACCAAGCGTTCACCAAAAGTTG-ACCGTCGGTCGGA 1082225 Query 19141 -ATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATT 19199 ||||| ||||||||||| || ||||| || ||||| || || ||||| | | | Sbjct 1082226 GATCCAGTTCAGTGCCCAGTCTGCCTTGCGCTTGACACACGGAATGGTCTCCACGGCGTC 1082285 Query 19200 AAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACAT 19259 || || ||| || || | | || || | ||| | || || | | ||| | Sbjct 1082286 GAAAAGGTACTCGCGTTCGGCAGCGTCCTTGATATAGGTGTCGATGAGAAGCGAATACGT 1082345 Query 19260 TTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTAT 19319 ||||| ||||| || || || || || || || || ||||||| || || | | Sbjct 1082346 CTCTGAGTGAATGTTCTCCATCATGATTTGGAAGCCATAGAAACATCGAGCCTCGGCAAC 1082405 Query 19320 CTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGC 19379 || || || | |||| | ||||| | || || || || || ||||| ||||| Sbjct 1082406 TTGGACCTCGTTGGAAAAGCGCTCGACAAGGTTCTCGTTGACAATACCATCCGAGGCTGC 1082465 Query 19380 AAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAA----TGTATTCC 19435 || || || | ||||| || ||||| || | || ||||| || ||| Sbjct 1082466 GAAGAAAGCGAGGACATGGGAGATGAAATGGCGCTCGT-TGTCGTTAAGGCGGGTGGTCC 1082524 Query 19436 AATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTT 19495 | |||| ||||||||| || | || | ||| || | |||||||| || ||||| || | Sbjct 1082525 AGTCATGAATATCTTTCGAGAGGTCCATTTCCTCTGCAGTCCAAAACGACGCCTCAGCCT 1082584 Query 19496 TTTTATACATGTTCCATAT 19514 | || ||||| | ||| || Sbjct 1082585 TCTTGTACATTTGCCAGAT 1082603 >seq179 Length=47363 Score = 125 bits (138), Expect = 8e-24 Identities = 369/568 (65%), Gaps = 7/568 (1%) Strand=Plus/Minus Query 18952 AACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAA 19011 |||| | |||||| || || |||||| || || ||||| || || | ||||| || Sbjct 9370 AACAAAAGACATGCGAAGTCGGTATGTAGACCTTCATCTCTGCTGATAAGCTCATTGGAG 9311 Query 19012 AATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCA 19071 || || || || ||||||| || | ||| || | ||| || || | || || || ||| Sbjct 9310 AAAGTCAATCCTGGCATCACACCACGTTTCTTCAGCCAAAAAATGGCCGCGAAGGAACCA 9251 Query 19072 GAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCA 19131 ||||| || || ||||| || ||||| || || || |||| | | | | Sbjct 9250 GAAAAAAAGATGCCTTCCACGCAGGCAAAGGCTACGAGGTGGCTTCCAAAGGCAACCGCG 9191 Query 19132 TTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCT 19191 || | |||||||||| ||||||||| ||||| |||| | || |||||| || Sbjct 9190 GAATCTTCGATCCATTTCAATGCCCAATCCGCCTTTCTTTTGATGCACTCCATTGTTTCA 9131 Query 19192 ATAGAATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAA 19251 | | || || |||| | || || || ||| |||||| | || || | |||| Sbjct 9130 AGCGCATCGAAGAGATGTAATCGTTCTCGGGTGTCTGCAACATAGGTGTCGATGAGTAAA 9071 Query 19252 CTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCT 19311 ||| |||| ||||| | ||||| || |||||||| |||||||| | | ||| Sbjct 9070 GAATACGTTTCGGAATGGACGTTTTCGATCATAATCTGAAAACCGTAAAACGAGCGAGCT 9011 Query 19312 TCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCA 19371 || | | ||| | ||| || ||| || | ||||| || || || || ||| Sbjct 9010 TCCAAAGGCCCAATTTCGCAACAGAAGTTTTGTACAAGGTTTTCGTTCACGATGCCGTCA 8951 Query 19372 CTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTG-----AGGTTA 19426 || ||||||||||| | ||||| | || ||| ||| | || ||| | Sbjct 8950 GACGCAGCAAAAAATGCAAGGACATGGGTGATGAAAAACCGTTCGTTTGCTGAAAGGCGA 8891 Query 19427 ATGTATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAG 19486 || | ||||||||||| ||| ||||| | ||| || || ||||||||||| | Sbjct 8890 --GTCTCCCAATCATTAAGATCGGACCGCAAATCGAGTTCATCGACCGTCCAAAAAGACG 8833 Query 19487 CCTCTGCTTTTTTATACATGTTCCATAT 19514 | || |||| || ||||| |||| || Sbjct 8832 CTTCGGCTTGCTTGTACATCATCCACAT 8805 >seq1000 Length=18647 Score = 102 bits (112), Expect = 9e-17 Identities = 363/560 (65%), Gaps = 7/560 (1%) Strand=Plus/Minus Query 18952 AACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAA 19011 |||| ||| || || || || ||| || |||||||| | ||| ||||||||||| || Sbjct 12410 AACAGCAAGCACGCGAAGTCGGTATGGAGGCCCTCGTCACAACTGATCAATTCATTGGAG 12351 Query 19012 AATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCA 19071 || || || |||||||| || |||| || || | ||| || |||| |||||||| || Sbjct 12350 AAAGTCAATCCAGGCATGAGCCCTCGCTTCTTGATCCAAAAGATAGCTGCAAATGAGCCG 12291 Query 19072 GAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCA 19131 |||||||| || ||||| || | ||| || | || | || | ||| | | | Sbjct 12290 GAAAAGAAAATGCCTTCAACACAGGAAAATGCCAAAAGACGCTCAGC-GAACGACCGCGA 12232 Query 19132 TTATTATG-AATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTC 19190 | | ||||||| ||| ||||| || |||||||| || || || |||| || || Sbjct 12231 GCGGTCGGTAATCCATGTCATCGCCCATTCTGCCTTCTTCTTCACGCAAGGCACAGTTTC 12172 Query 19191 TATAGAATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAA 19250 |||| || || || | ||| | | ||| | | || | || || || || Sbjct 12171 GATAGCGTTGAAAAGTAAGGCCTTCTCCTTGGGATCGGTGATGTAGGTGTCGATTAACAA 12112 Query 19251 ACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGC 19310 ||| |||| ||||||| |||||| || | ||| || | || ||| | || Sbjct 12111 GGAGTATGTTTCAGAATGAACATTTTCAATCATGACCTGGAAGGCATAGAAAGCCCAAGC 12052 Query 19311 TTCTGTTATCTGTACTTCACTA-CAAAATCTTTCGACCAAATTTTCATTAACTATTCCAT 19369 |||| | | || || | | |||| |||| | ||| || || || || ||||||| Sbjct 12051 TTCTCTCGGCGAAACCTCCTGAGCGAAAT-TTTCCAGCAAGTTCTCGTTGACAATTCCAT 11993 Query 19370 CACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTA-AT 19428 | || |||||||| || || || ||| || ||| |||| | || || | | Sbjct 11992 CGGACGCCGCAAAAAAAGCCAACACGTGTGAAAGGAAAGACCTTTCGCCAGAAGTCAGGT 11933 Query 19429 G--TATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAG 19486 | | |||| || | || || | | ||||| ||| || ||||||||||| | Sbjct 11932 GATTTGTCCAGTCGACGACGTCGTTCGCCAGATCTAATTCATCTGTCGTCCAAAAAGATG 11873 Query 19487 CCTCTGCTTTTTTATACATG 19506 | || |||| ||| |||||| Sbjct 11872 CTTCGGCTTGTTTGTACATG 11853 >seq247 Length=45445 Score = 89.7 bits (98), Expect = 6e-13 Identities = 176/257 (68%), Gaps = 5/257 (2%) Strand=Plus/Plus Query 18952 AACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAA 19011 |||| | ||| ||||| || ||| ||||| |||||||| || || | ||| || ||| Sbjct 37324 AACAATAGACAGGCAAAGTCCGTATGAAGTCCTTCGTCTCTGCTGATTAGTTCGTTCGAA 37383 Query 19012 AATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCA 19071 || ||||| || ||||| || || | ||| || | ||| || | | ||||| ||||| Sbjct 37384 AAAGTTAAGCCTGGCATAAGCCC-CGTTTCTTAATCCAAAAGACTGCTGCAAACGATCCG 37442 Query 19072 GAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCA 19131 || ||||| || ||||| || ||||| ||||| | | ||| | | || | Sbjct 37443 GAGAAGAAAATGCCTTCCACACACGCAAAGGCAACCAAACGTTCGGGAAAG--AGGCGGA 37500 Query 19132 TT--ATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCT 19189 || || || ||||||||||| |||||| | || || | | | ||| || || |||| Sbjct 37501 TTGGATCATTAATCCATTTCAATGCCCAGTTCGCTTTTTCCTGGATACAGGGAATAGTCT 37560 Query 19190 CTATAGAATTAAATAGA 19206 | |||| || || ||| Sbjct 37561 CGATAGCGTTGAAGAGA 37577 >seq434 Length=244965 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 48222 TCTGGTATCCAAAGAGC-TATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATT 48280 || || ||||| || || || ||| | ||| || | || |||||| |||||| ||| Sbjct 87313 TCAGGGATCCACAGCGCGTAGAAA-AGATCTCTTGCCCTAGATTCTTCCTTGCCATGATT 87371 Query 48281 CCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCAT 48340 | | | || || || || | | |||||||||||| ||||| | || || || | Sbjct 87372 CTTCCGTAAATCGAGGAAATCAAACACATCAGCATGCCAGGGTTCGATGTAGATCGCGAA 87431 Query 48341 TACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCT 48400 | | |||||||| || || ||||||||||| | || | ||||| | |||| | | Sbjct 87432 TGCTCCTGGTCGCTTGTTTCCTCCTTGATCGACGTAGCGAGCAGTGGCATCATAAGCACG 87491 Query 48401 TAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATA 48448 | |||||| || || |||||||| ||||||||| || | ||| || Sbjct 87492 AAGCATTGGCACTATGCCATTTGAATAACCATTGGTCCCAGCAATGTA 87539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562033660106160