Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001661215.1_202016-05-11] 10,694 sequences; 59,384,214 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq32 149 7e-31 seq179 143 3e-29 seq1000 109 7e-19 seq925 86.0 7e-12 >seq32 Length=1481398 Score = 149 bits (164), Expect = 7e-31 Identities = 318/475 (67%), Gaps = 0/475 (0%) Strand=Plus/Minus Query 37161 TATTTAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCA 37220 ||| | ||||||| |||||| ||||| || || || || |||| ||| || | ||| Sbjct 1084283 TATGTGAACAATAGACATGCGAAATCGGTGTGCAAGCCCTCGTCTCGACTAATAAGCTCA 1084224 Query 37221 TTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAA 37280 || ||||| || | || ||||| | ||| | ||| || ||||| ||||||| ||||| Sbjct 1084223 TTGGAAAATGTCAGGCCAGGCATAAGACCACGTTTCTTGATCCAGAATATTGAGGCAAAC 1084164 Query 37281 GATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTT 37340 || ||||||||||| || ||||| || || ||||| || || |||||| |||| ||| Sbjct 1084163 GACCCAGAAAAGAATATCCCTTCGACAGCAGCAAAGGCAACTAGACGTTCCGCGAAGGTT 1084104 Query 37341 GAACTATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATT 37400 ||| | || |||||||||||| | |||||| || || || | || ||| Sbjct 1084103 GAATGTTTGTCTGAAATCCATTTTAGAGCCCAATCAGCTTTGCGCTTGATGCAAGGAATG 1084044 Query 37401 GTTTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATT 37460 || || || || | || || | || | ||| | || || ||| || Sbjct 1084043 GTGTCTATGGCGTCGAAAAGGTGGGCCCGCTCCTGCGGATCCTTGATGTAGCCATCGATA 1083984 Query 37461 AGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACAC 37520 || || |||| |||| || || ||||| || || || ||||| ||||| || | Sbjct 1083983 AGCAACGAATACGTTTCGGAATGGATATTCTCCATCATGATTTGAAAGCCATAGAAGGAA 1083924 Query 37521 CTAGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATC 37580 | || || | || || || || | ||||||| | | | ||| || || || || Sbjct 1083923 CGCGCCTCGGGTACCTGCACTTCACCACAAAACCTTTCGACGAGGTTCTCGTTTACAATG 1083864 Query 37581 CCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAT 37635 ||||| || ||||||||||||||||||| |||||||| | ||||||| Sbjct 1083863 CCATCTGAGGCCGCAAAGAAAGCAAGAACATGCGATATAAAATACCGCTCATCAT 1083809 >seq179 Length=47363 Score = 143 bits (158), Expect = 3e-29 Identities = 251/363 (69%), Gaps = 2/363 (1%) Strand=Plus/Minus Query 37167 AACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAA 37226 ||||| | |||||| || || ||||| |||||||||||| || || | ||||| || Sbjct 9370 AACAAAAGACATGCGAAGTCGGTATGTAGACCTTCATCTCTGCTGATAAGCTCATTGGAG 9311 Query 37227 AAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCA 37286 || || ||||||||||| | ||| | ||| || | |||||| || || || || || ||| Sbjct 9310 AAAGTCAATCCTGGCATCACACCACGTTTCTTCAGCCAAAAAATGGCCGCGAAGGAACCA 9251 Query 37287 GAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAAC-T 37345 ||||| || || ||||| || ||||| ||||| || | | || |||| | | Sbjct 9250 GAAAAAAAGATGCCTTCCACGCAGGCAAAGGCTACGAGGTGGCTTCC-AAAGGCAACCGC 9192 Query 37346 ATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTC 37405 |||| |||||||| || |||||| |||||| ||| | || || |||||||| Sbjct 9191 GGAATCTTCGATCCATTTCAATGCCCAATCCGCCTTTCTTTTGATGCACTCCATTGTTTC 9132 Query 37406 AATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAA 37465 || || | |||||| | |||| | |||| | ||| || || || ||||| Sbjct 9131 AAGCGCATCGAAGAGATGTAATCGTTCTCGGGTGTCTGCAACATAGGTGTCGATGAGTAA 9072 Query 37466 ACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGC 37525 | |||| |||| || || | ||||| || ||||||||||| ||||| | | ||| Sbjct 9071 AGAATACGTTTCGGAATGGACGTTTTCGATCATAATCTGAAAACCGTAAAACGAGCGAGC 9012 Query 37526 TTC 37528 ||| Sbjct 9011 TTC 9009 >seq1000 Length=18647 Score = 109 bits (120), Expect = 7e-19 Identities = 226/335 (67%), Gaps = 6/335 (2%) Strand=Plus/Minus Query 37197 CCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCttttt 37256 || || || | ||| ||||||||||| || || || ||||| ||||| | |||| || Sbjct 12380 CCCTCGTCACAACTGATCAATTCATTGGAGAAAGTCAATCCAGGCATGAGCCCTCGCTTC 12321 Query 37257 ttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAAT 37316 || |||||||| || |||||||| || || ||||||||||| |||||||| | |||| Sbjct 12320 TTGATCCAAAAGATAGCTGCAAATGAGCCGGAAAAGAAAATGCCTTCAACACAGGAAAAT 12261 Query 37317 GCTACAAGACGTGTACCGAAAG---TTGAACTATAATCAGAAATCCAtttttttGTCCAA 37373 || | |||||| | |||| | || | || | ||||||| | | | ||| Sbjct 12260 GCCAAAAGACGCTCAGCGAACGACCGCGAGC---GGTCGGTAATCCATGTCATCGCCCAT 12204 Query 37374 TCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTTTTAAGAGAAAGtttttttCT 37433 |||||||| || || || | ||||| || || || || || ||| || || Sbjct 12203 TCTGCCTTCTTCTTCACGCAAGGCACAGTTTCGATAGCGTTGAAAAGTAAGGCCTTCTCC 12144 Query 37434 TCACTATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCA 37493 | ||| || || || || || |||| || || ||||||| |||| ||||||| Sbjct 12143 TTGGGATCGGTGATGTAGGTGTCGATTAACAAGGAGTATGTTTCAGAATGAACATTTTCA 12084 Query 37494 ATAGCTATCTGAAAACCATAAAAACACCTAGCTTC 37528 || | ||| || |||| ||| || |||||| Sbjct 12083 ATCATGACCTGGAAGGCATAGAAAGCCCAAGCTTC 12049 >seq925 Length=43645 Score = 86.0 bits (94), Expect = 7e-12 Identities = 224/342 (65%), Gaps = 0/342 (0%) Strand=Plus/Plus Query 37175 ACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAA 37234 ||| || ||||| || | ||| ||||||| || || | || || | || | || Sbjct 13684 ACACGCGAAATCTGTGTGAAGACCCTCATCTCGGCTGATAAGCTCGTTTGCGAACGATAG 13743 Query 37235 TCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAA 37294 ||||||||| ||||| ||||| || | |||||| || || || || || || |||||||| Sbjct 13744 TCCTGGCATCAAACCCCTTTTCTTCAACCAAAAGATCGCGGCGAATGAGCCGGAAAAGAA 13803 Query 37295 AATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCAGA 37354 ||| ||||| || ||| || || | | ||| |||||| ||| | |||| Sbjct 13804 AATCCCTTCTACGCATGCGAAAGCCAACAATCGTTCACCGAACGTTCTTTCCTCGTCAGT 13863 Query 37355 AATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTTT 37414 ||||| | | ||||||||| ||| || || || ||||||||| || || || Sbjct 13864 TATCCAAGTCAAAGCCCAATCTGCTTTTTTCTTCACGCAAGGAATTGTTTCCATCGCATT 13923 Query 37415 TAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACAT 37474 || || | || |||| | || | |||||| | || || | | ||||| Sbjct 13924 GAATAGTTCGCTTCTTTCGTTGTCGTCCTTGATATAACTGTCGATCAAAAGCGAATACAC 13983 Query 37475 TTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAA 37516 ||| ||||| | ||||| || | |||||| || || || Sbjct 13984 TTCCGAGTGGACGTTTTCGATCATGAACTGAAAGCCGTAGAA 14025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592237622051760