Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001661215.1_202016-05-11] 10,694 sequences; 59,384,214 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq2021 132 4e-26 seq9840 125 5e-24 seq9206 87.8 1e-12 seq9278 84.2 2e-11 >seq2021 Length=7336 Score = 132 bits (146), Expect = 4e-26 Identities = 154/208 (74%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 48559 CCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCA 48618 |||| || || |||||||| || |||||||||||||| || | | | || |||| |||| Sbjct 265 CCAAGTGAAGGGTGCTCTCCTTCTGAATATTGTAATCCGACAAAGTACGCCCGTCCTCCA 206 Query 48619 ACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAA 48678 ||||||| |||||||| || || ||||| || || | |||| ||||||||| || || Sbjct 205 ACTGCTTCCCGGCAAAGATGAGGCGCTGCTGGTCAGGAGGAATGCCCTCCTTATCCTGAA 146 Query 48679 TCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTC 48738 |||| || ||| | | | || || | ||| || |||| ||| ||||| |||| Sbjct 145 TCTTCGCCTTCACATTGTCAATCGTATCCGAAGACTCGACTTCCAACGTGATCGTCTTTC 86 Query 48739 CCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||||||||| || || || || ||||| Sbjct 85 CCGTCAAAGTCTTCACGAAGATTTGCAT 58 >seq9840 Length=425 Score = 125 bits (138), Expect = 5e-24 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48563 ATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTG 48622 ||| ||||| ||| || || || ||||||||||| ||| ||||| |||| || | || Sbjct 237 ATGGAGCGTTGACTCCTTCTGGATGTTGTAATCAGAAAGAGTTCGACCGTCCTCGAGTTG 178 Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682 ||| ||||| || || || ||||| ||||| | |||| ||||||||| || |||||| Sbjct 177 CTTGCCGGCGAAAATTAGGCGCTGCTGATCGGGAGGAATGCCCTCCTTATCCTGAATCTT 118 Query 48683 TTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGT 48742 | || ||| | | | || || | |||||| |||| ||| ||||| || || || Sbjct 117 TGCCTTGACATTGTCGATGGTGTCGGAAGACTCCACTTCCAGCGTGATCGTCTTGCCGGT 58 Query 48743 CAAAGTTTTTACAAAAATCTGCAT 48766 ||| || || |||||||||||||| Sbjct 57 CAATGTCTTCACAAAAATCTGCAT 34 >seq9206 Length=299 Score = 87.8 bits (96), Expect = 1e-12 Identities = 91/118 (77%), Gaps = 1/118 (1%) Strand=Plus/Minus Query 48557 CACCAAA-TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGT 48615 |||||| || || ||| ||| || ||||| ||||||||||| ||| | ||| | || | Sbjct 178 CACCAAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGAAAGAGTGCGACCATCTT 119 Query 48616 CCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 ||| |||||| ||||| || |||| |||||||| || | ||| | ||||||||||| Sbjct 118 CCAGCTGCTTTCCGGCGAAGATCAAGCGCTGTTGGTCAGGGGGGATACCCTCCTTGTC 61 >seq9278 Length=305 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || ||||| || ||||| || ||| | || |||| || | |||||| || ||||| Sbjct 204 CTCCTTCTGAATGTTATAATCGGAAAGAGTGCGCCCGTCCTCGAGCTGCTTGCCCGCAAA 263 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 |||| |||||||| |||| ||||| |||||||||||| Sbjct 264 GATCAAACGCTGTTGGTCCGGGGGAATGCCCTCCTTGTC 302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380887951212162