Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001661215.1_202016-05-11] 10,694 sequences; 59,384,214 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq32 149 1e-30 seq179 93.3 8e-14 seq434 89.7 1e-12 >seq32 Length=1481398 Score = 149 bits (164), Expect = 1e-30 Identities = 378/572 (66%), Gaps = 11/572 (2%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| | ||||||||||||||| | || ||||| || || || || || || Sbjct 1082603 ATCTGGCAAATGTACAAGAAGGCTGAGGCGTCGTTTTGGACTGCAGAGGAAATGGACCTC 1082544 Query 25537 GCCAAGGACATGGACGGCTGG----TACGCTCTATCCAAAGACGAGCAGCATTTTCTCAA 25592 | || || || | | |||| ||| || | | | |||||| ||||| || Sbjct 1082543 TCGAAAGATATTCATGACTGGACCACCCGCCTTAACGACA-ACGAGCGCCATTTCATCTC 1082485 Query 25593 GTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAG 25652 | || | || ||||| |||||||| |||||||| || |||||||| || |||| | Sbjct 1082484 CCATGTCCTCGCTTTCTTCGCAGCCTCGGATGGTATTGTCAACGAGAACCTTGTCGAGCG 1082425 Query 25653 ATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCAT 25712 || ||| || || || | ||||| |||||||| || ||||| || || Sbjct 1082424 CTTTTCCAACGAGGTCCAAGTTGCCGAGGCTCGATGTTTCTATGGCTTCCAAATCATGAT 1082365 Query 25713 CGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT---GACGTACATTACAGACGT 25769 || || | ||||| ||| |||| | |||||| || || || || | |||| Sbjct 1082364 GGAGAACATTCACTCAGAGACGTATTC---GCTTCTCATCGACACCTATATCAAGGACGC 1082308 Query 25770 CGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGC 25829 ||||| | || || || | ||| | ||| ||| || | ||||| | ||||| Sbjct 1082307 TGCCGAACGCGAGTACCTTTTCGACGCCGTGGAGACCATTCCGTGTGTCAAGCGCAAGGC 1082248 Query 25830 GCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGC 25889 ||||| |||| |||||| | || | | || ||||| || || |||| || Sbjct 1082247 AGACTGGGCACTGAACTGGATCTCCGACCGACGGTCAACTTTTGGTGAACGCTTGGTGGC 1082188 Query 25890 CTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAA 25949 ||||||||||| || |||||||| ||| || || || ||| ||||||||||| | || Sbjct 1082187 GTTTGCTGCTGTTGAAGGCATCTTCTTCTCGGGCTCTTTCGCGTCCATCTTCTGGATGAA 1082128 Query 25950 GCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGG 26009 | || || ||||| || ||| |||||||| |||||||| ||| | ||||| || Sbjct 1082127 GAAGCGAGGCTTGATGCCTGGCCTGACTTTTTCCAATGAGCTCATTAGCCGCGACGAAGG 1082068 Query 26010 TCTCCACAGAGATTTTGCCTGCCTGCTCTACA 26041 | |||| || ||||| ||||| |||| || Sbjct 1082067 AATGCACACCGACTTTGCATGCCTTCTCTTCA 1082036 >seq179 Length=47363 Score = 93.3 bits (102), Expect = 8e-14 Identities = 159/223 (71%), Gaps = 6/223 (3%) Strand=Plus/Plus Query 25814 GCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATC-AACAGCCAGAGCGCTACGTTT 25872 ||||||| || |||||| ||||| |||| |||||| || | | | | | | | ||| Sbjct 9145 GCATCAAAAGAAAGGCGGATTGGGCATTGAAATGGATCGAAGATTCCGCG-GTTGCCTTT 9203 Query 25873 GGCGAGCGGCTGGTAGCCTTTG-CTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGC 25931 || | || |||||||||| |||| ||||| ||||||||||| ||||| || || Sbjct 9204 GGAAGCCACCTCGTAGCCTTTGCCTGC-GTGGAAGGCATCTTTTTTTCTGGTTCCTTCGC 9262 Query 25932 GGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTT-TCCAACGAGC 25990 |||||| || ||||| ||| | || ||||| || || ||||| ||||| |||| Sbjct 9263 GGCCATTTTTTGGCTGAAGAAACGTGGTGTGATGCCAGGATTG-ACTTTCTCCAATGAGC 9321 Query 25991 TCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCT 26033 | |||||||| || || ||||| || | || || || || || Sbjct 9322 TTATCAGCAGAGATGAAGGTCTACATACCGACTTCGCATGTCT 9364 >seq434 Length=244965 Score = 89.7 bits (98), Expect = 1e-12 Identities = 130/182 (71%), Gaps = 4/182 (2%) Strand=Plus/Plus Query 221419 CAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAGA 221478 ||| ||| |||| ||||| ||||| ||||| ||||||| |||||| | || || Sbjct 86600 CAGTGCACCGTGATAGATCGTCTCGAAGATTTGAATGTTGAGCTCCTTGGCTGCTGGTGA 86659 Query 221479 AGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGAT 221538 || |||||| |||| | ||| |||||||||| ||||| || ||||| ||||| Sbjct 86660 GTCAAATGGCATATGCAGAGCCATGAAGGCGTCGGCCAGACCCTGCACACCGATTCCGAT 86719 Query 221539 GGGCCTGTGTCTCCTGTTGGAAGCGGCCG--CTTCTGGCACGGGATAAAAGTTGACGTCG 221596 ||| | || | | |||| || | |||| | || || || ||||| ||||||||||| Sbjct 86720 GGGTCGATGGCGCATGTTTGA--CCGCCGAGCCTCCGGAACAGGATAGTAGTTGACGTCG 86777 Query 221597 AT 221598 || Sbjct 86778 AT 86779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928720636671360