Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001661215.1_202016-05-11] 10,694 sequences; 59,384,214 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq1000 131 2e-25 seq925 104 3e-17 seq247 104 3e-17 seq4743 96.9 4e-15 seq434 89.7 6e-13 >seq1000 Length=18647 Score = 131 bits (144), Expect = 2e-25 Identities = 288/421 (68%), Gaps = 12/421 (3%) Strand=Plus/Plus Query 64802 TGGCATTCTTTGCTGGGTCCGATGGAATTGTTTTTGAGAATATCAATAACAATTTTGCGG 64861 |||| || ||||| | ||||||||||||||| ||||| | | ||||| || Sbjct 11972 TGGCTTTTTTTGCGGCGTCCGATGGAATTGTCAACGAGAACTTGCTGGAAAATTTCGCTC 12031 Query 64862 ATGAAGTGCAGATAAGCGAAGCGCGCTCATTCTACGCATATCAATGCCAT-AATGAAATG 64920 | || || | || ||||| | | ||||| || | || | | ||| | ||||| Sbjct 12032 AGGAGGTTTCGCCGAGAGAAGCTTGGGCTTTCTATGCCT-TCCAGGTCATGATTGAAAAT 12090 Query 64921 GTTCATGGCGAAACATATTCAAAATTGATTGACAAATACATTAAGGATGGATCTGAAAAG 64980 |||||| |||||||| || || || |||| ||||| | ||| | | || Sbjct 12091 GTTCATTCTGAAACATACTCCTTGTTAATCGACACCTACATCACCGAT---CCCAAGGAG 12147 Query 64981 AAGCAGTTA--TTTGAA-GCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAATGG 65037 ||| ||| ||| || || ||| ||||||| || || | |||||||||| ||||| Sbjct 12148 AAGGCCTTACTTTTCAACGCTATCGAAACTGTGCCTTGCGTGAAGAAGAAGGCAGAATGG 12207 Query 65038 GCAATGAAATGGTTTGACACAAAG-TCTCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGC 65096 || |||| |||| || || | | || || || ||||| ||||| ||||| || ||| | Sbjct 12208 GCGATGACATGGATT-ACCGACCGCTCGCGGTCGTTCGCTGAGCGTCTTTTGGCATTTTC 12266 Query 65097 GTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGC-GCTATTTATTGGTTGAAGAAGC 65155 ||||| || || || ||||| ||||| ||||| ||| ||||| | |||| | ||||||| Sbjct 12267 CTGTGTTGAAGGCATTTTCTTTTCCGGCTCATT-TGCAGCTATCTTTTGGATCAAGAAGC 12325 Query 65156 GGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCC 65215 | || |||||||| || | ||||| |||||| | || | || ||||| |||| Sbjct 12326 GAGGGCTCATGCCTGGATTGACTTTCTCCAATGAATTGATCAGTTGTGACGAGGGCCTCC 12385 Query 65216 A 65216 | Sbjct 12386 A 12386 >seq925 Length=43645 Score = 104 bits (114), Expect = 3e-17 Identities = 102/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 65086 TTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTATTGG 65145 || || || || || || || || || ||||| ||||| |||||| ||| || | |||| Sbjct 13830 TTGGCTTTCGCATGCGTAGAAGGGATTTTCTTTTCCGGCTCATTCGCCGCGATCTTTTGG 13771 Query 65146 TTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGAGAT 65205 |||||||| ||||| | |||||||| |||| ||| |||| || ||||| ||||||| Sbjct 13770 TTGAAGAAAAGGGGTTTGATGCCAGGACTATCGTTCGCAAACGAGCTTATCAGCCGAGAT 13711 Query 65206 GAGGGTCTCCAC 65217 |||||||| ||| Sbjct 13710 GAGGGTCTTCAC 13699 >seq247 Length=45445 Score = 104 bits (114), Expect = 3e-17 Identities = 170/238 (71%), Gaps = 9/238 (4%) Strand=Plus/Minus Query 64996 GCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTT--- 65052 || ||| | ||| | || ||||| || | || ||||| |||||| |||||||| || Sbjct 37567 GCTATCGAGACTATTCCCTGTATCCAGGAAAAAGCGAACTGGGCATTGAAATGGATTAAT 37508 Query 65053 GACACAAAGTCTCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATC 65112 || ||| || ||| ||| |||| || | |||| |||||||||||||| || || Sbjct 37507 GATCCAA--TCCGCCTCTTTC-CCGAACGTTTGGTTGCCTTTGCGTGTGTGGAAGGCATT 37451 Query 65113 TTCTTCTCCGGGTCATTCTGC-GCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGG 65171 ||||||||||| || || ||| || | | |||| | ||||| ||||| || |||||||| Sbjct 37450 TTCTTCTCCGGATCGTT-TGCAGCAGTCTTTTGGATTAAGAAACGGGG-CTTATGCCAGG 37393 Query 65172 CCTATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCC 65229 | || || || || ||||| || | |||| || || || || ||| |||||| Sbjct 37392 CTTAACTTTTTCGAACGAACTAATCAGCAGAGACGAAGGACTTCATACGGACTTTGCC 37335 >seq4743 Length=11411 Score = 96.9 bits (106), Expect = 4e-15 Identities = 201/293 (69%), Gaps = 10/293 (3%) Strand=Plus/Minus Query 13571 GACGCGAACAAGGCGGGTACGGCACAATCTGGAAAGTGTACTCTCATTGTCACAGAGGGT 13630 || || ||||| ||||| || ||| | || ||||| || ||| |||| || || Sbjct 7645 GATGCCAACAACGCGGGAACCAAACACGCGAAGAACTGTACCCTGATTCTCACCGAAGGA 7586 Query 13631 GATTCGGCTAAAACCCTCGCGGTTGCGGGTCTCTCTGTCGTTGGTCGTGATCACTACGGT 13690 || || |||||| |||| ||||| || |||||| || ||||| | || ||| |||| Sbjct 7585 GACTCCGCTAAAGCCCTGGCGGTGGCTGGTCTCGGAGTTGTTGGCAGAGACAACTTCGGT 7526 Query 13691 GTGTTCCCACTTCGCGGTAAATGTAAGAATGTTCGGGACGCTTCGGTGGCAC-AGCTCA- 13748 |||||||| |||||||| || | |||||||| || || | | ||| ||| | Sbjct 7525 GTGTTCCCCCTTCGCGGCAAGTTGCTCAATGTTCGCGAGGC----GCGACACGAGCAAAT 7470 Query 13749 CATCA--AACCAGGAGTTCAACGATCTCAAGAAGATCCTTGGTCTTCAACAAGGAAAAGA 13806 ||| | ||| | || || | || ||||||||||| | || || || || || || Sbjct 7469 CATGAAGAACGAAGAAATCCAGAATATCAAGAAGATCATGGGGCTGCAGCATAACAAGGA 7410 Query 13807 CTACCAAGATGTTTCTGAACTT-CGCTATGGTCGTCTTATGATTATGACAGAT 13858 ||| || || ||| ||| || || ||||| || ||||||||||| ||| Sbjct 7409 CTA-CACGAATACCATGAGCTTGCGGTACGGTCGACTCATGATTATGACTGAT 7358 >seq434 Length=244965 Score = 89.7 bits (98), Expect = 6e-13 Identities = 157/227 (69%), Gaps = 9/227 (4%) Strand=Plus/Minus Query 75503 GGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCG 75562 ||||| |||||| | ||| |||| || | ||||||||||| | | | | ||||| || Sbjct 87530 GGGACCAATGGTTATTCAAATGGCATAGTGCCAATGCTTCGTGCTTATGATGCCACTGCT 87471 Query 75563 CGCTATGTAAATCAAGCGGG------GCGTCGCAAGGGGTCCATCGCGGTCTACTTGGAA 75616 ||||| || |||||| || ||| | || || | ||||| ||||| | ||| Sbjct 87470 CGCTACGTCGATCAAGGAGGAAACAAGCGAC-CA--GGAGCATTCGCGATCTACATCGAA 87414 Query 75617 CCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAG 75676 || |||||||| ||| | | || ||||| || ||||| || || || | ||||| Sbjct 87413 CCCTGGCATGCTGATGTGTTTGATTTCCTCGATTTACGGAAGAATCATGGCAAGGAAGAA 87354 Query 75677 GCTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTT 75723 || || |||||||| || | | |||||||| || |||||||| Sbjct 87353 TCTAGGGCAAGAGATCTTTTCTACGCGCTGTGGATCCCTGACCTTTT 87307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596489853558720