Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001661215.1_202016-05-11] 10,694 sequences; 59,384,214 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq32 113 1e-19 seq1115 95.1 4e-14 >seq32 Length=1481398 Score = 113 bits (124), Expect = 1e-19 Identities = 254/379 (67%), Gaps = 6/379 (2%) Strand=Plus/Plus Query 133281 GGTTTATGGGAGAAGTTCAACTGGCCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGA 133340 ||||| || ||||| || | |||| || ||| |||| ||||| | || || || Sbjct 1083890 GGTTTTGTGGTGAAGTGCAGGTACCCGAGGCGCGTTCCTTCTATGGCTTTCAAATCATGA 1083949 Query 133341 TGGAAAATATCCATTCTATCACATATTCTACTCTAATTGATACTTACATCAAAGATACCG 133400 |||| ||||||||||| || ||||| || || ||| |||||||| ||| ||| Sbjct 1083950 TGGAGAATATCCATTCCGAAACGTATTCGTTGCTTATCGATGGCTACATCAAGGAT-CCG 1084008 Query 133401 TCCAGAAGC---ACAAACTATTCAACGCCATTAGCGAATTTCCTTGTATTAAAAAGAAAT 133457 ||| ||| | | || ||| ||||||| | ||||||| || || ||| Sbjct 1084009 --CAGGAGCGGGCCCACCTTTTCGACGCCATAGACACCATTCCTTGCATCAAGCGCAAAG 1084066 Query 133458 CTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGAGTTTTGCTACTCGTCTCGTTG 133517 |||| |||||| | |||||||| ||||| | | | | || || ||||| |||| Sbjct 1084067 CTGATTGGGCTCTAAAATGGATTTCAGACAAACATTCAACCTTCGCGGAACGTCTAGTTG 1084126 Query 133518 CTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGTTCTGCTCTATTTTTTGGCTTA 133577 | ||||||| || || || || || || ||| |||| ||| || || ||| | | Sbjct 1084127 CCTTTGCTGCTGTCGAAGGGATATTCTTTTCTGGGTCGTTTGCCTCAATATTCTGGATCA 1084186 Query 133578 AAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACGAACTTATTTCAAGGGACGAGG 133637 | || |||||| || | ||||| ||| ||||| || || |||||| | ||||||| Sbjct 1084187 AGAAACGTGGTCTTATGCCTGGCCTGACATTTTCCAATGAGCTTATTAGTCGAGACGAGG 1084246 Query 133638 CACTTCACACCGAATTTGC 133656 | |||||||| || || Sbjct 1084247 GCTTGCACACCGATTTCGC 1084265 >seq1115 Length=51211 Score = 95.1 bits (104), Expect = 4e-14 Identities = 192/280 (69%), Gaps = 10/280 (4%) Strand=Plus/Minus Query 302593 CGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGA 302652 ||||||||||| |||||||| | || || || |||||||| || | ||| | ||| Sbjct 12524 CGACGCTGAATGTAACCAGTCTCGGCAGTCTTCACGGCTGTATCGATCAAACCCTCGCGA 12465 Query 302653 CCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCA 302712 ||| |||| || |||||||| | ||| | ||| | ||| | || | | || |||| Sbjct 12464 CCAGCCATGGCGTGGAAGAAAAACTCCTGCGGAGTCAACCCGCGAAGATATGAATTCTCC 12405 Query 302713 ACGAAACCACGCGCCTC-GGGC--GAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTG 302769 |||||||| || || || |||| |||| || |||||| ||||| || ||||||| Sbjct 12404 ACGAAACCGCGAGCTTCTGGGCTGAAATCATC---CTTGGTGAAGTGGGGAAGGGTCCGA 12348 Query 302770 TTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATC 302829 | ||||| | || || || || || || ||||||| |||| ||| | | Sbjct 12347 TGACGGAAGCCGAAGGGAATCCGTCGACCTTCCACACTCTGCTGCCCCACGCAAACAGAC 12288 Query 302830 ATCTGCGAAATATT--TAAATCACTGCCCTTGGAGCCAGC 302867 |||||||| || || | || | ||||| |||||||| Sbjct 12287 ATCTGCGAGATGTTGATGAACGA--ACCCTTTGAGCCAGC 12250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471615936151878