Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001661215.1_202016-05-11] 10,694 sequences; 59,384,214 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq32 138 1e-26 seq179 102 1e-15 seq1986 100 3e-15 seq915 100 3e-15 seq1000 89.7 6e-12 seq468 87.8 2e-11 seq467 87.8 2e-11 >seq32 Length=1481398 Score = 138 bits (152), Expect = 1e-26 Identities = 207/287 (72%), Gaps = 9/287 (3%) Strand=Plus/Plus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 ||||||||||| || || | || ||| ||| | ||||| ||||| | ||| |||||| Sbjct 1082068 CCTTCGTCGCGGCTAATGAGCTCATTGGAAAAAGTCAGGCCAGGCATCAAGCCTCGCTTC 1082127 Query 869240 TTGAGCCAAAAGATGG-CGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 || | ||| ||||||| ||| |||| ||||||||| |||||||| || || || ||||| Sbjct 1082128 TTCATCCAGAAGATGGACGC-GAAAGAGCCCGAGAAGAAGATGCCTTCAACAGCAGCAAA 1082186 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTC-CTTGTTGATCCACTTCATCGCCC 869357 | | | || || |||| || | || || | | |||||| |||| |||| Sbjct 1082187 CGCCACCAAGCGTTCACCAAAAGT----TGACCGTCGGTCGGAGATCCAGTTCAGTGCCC 1082242 Query 869358 AGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCG-CGAAAGAGGTGGTCCTTT 869416 |||| ||||| | | || |||| | || || | |||| ||||| |||| || | Sbjct 1082243 AGTCTGCCTTGCGCTTGACACACGGAATGGTCTCCACGGCGTCGAAA-AGGTACTCGCGT 1082301 Query 869417 TCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463 ||||| | |||||||| |||||||||||| || |||||||| ||||| Sbjct 1082302 TCGGCAGCGTCCTTGATATAGGTGTCGATGAGAAGCGAATACGTCTC 1082348 >seq179 Length=47363 Score = 102 bits (112), Expect = 1e-15 Identities = 141/193 (73%), Gaps = 6/193 (3%) Strand=Plus/Minus Query 868697 GCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCC 868756 || |||||| | || || ||| |||||||||||||| || ||||| ||||||| ||| Sbjct 9700 GCATACTCGGCGACCCGTTTCTCAAAAAAGTTGGTCTTTCCTTCGAGGGAGATCATGTCC 9641 Query 868757 ATCCACGGGAACGGGTTGGGCGTCTTGTA-GTGCTTTTCGCAT--CCGAGCGACGCGAGC 868813 || | || ||||| || | || | |||||| || | ||||||| || | | Sbjct 9640 ATGAAGTCAAAAGGGTTTT-CGACATGGAAGTGCTT--CGAAAGGCCGAGCGCAGCTAAC 9584 Query 868814 AGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATGAGC 868873 || | ||| || ||||||||||||||| | ||||||| |||||||||| ||||| || Sbjct 9583 AGTCTGTCAGCCACAAACTCGATGTACCGTTTCATGAGGTCGGCGTTCATACCGATCAGA 9524 Query 868874 GCCACCGGCAGCG 868886 || || |||| || Sbjct 9523 GCTACGGGCAACG 9511 >seq1986 Length=18588 Score = 100 bits (110), Expect = 3e-15 Identities = 111/148 (75%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 19045 AGGACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCG 19104 ||||| ||||||||||| || || ||||| ||| | || || | ||||| || | Sbjct 9454 AGGACTCGATCGGCGGCACTGTCACCTGCGTCATCCGCCATGTCCCATCCGGCCTTGGTG 9513 Query 19105 AGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCA 19164 | || |||||||||| |||| ||| | |||| ||||| ||||| ||||||||||||| Sbjct 9514 AACCCGTCTTTGACAAGTTCGAAGCCACACTCGGGCACGCGATGCTCTCGATCCCGGCCA 9573 Query 19165 CCAAGGGATTCGAGATTGGCAGCGGGTT 19192 |||| || || ||||| || |||||| Sbjct 9574 CCAAAGGCTTTGAGATCGGGTCCGGGTT 9601 >seq915 Length=31643 Score = 100 bits (110), Expect = 3e-15 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 19053 ATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAGCCGTGC 19112 ||||||||||| || || ||||| ||| | || || | |||||||| || || | Sbjct 22559 ATCGGCGGCACTGTCACCTGCGTCATCCGCCATGTCCCATCTGGCCTCGGTGAACCCGTC 22618 Query 19113 TTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACCAAGGGA 19172 ||||| ||| |||| ||| | |||| || |||||||| |||||||| |||||||| ||| Sbjct 22619 TTTGATAAGTTCGAAGCCACACTCGGGCATGCCATGCTCTCGATCCCTGCCACCAAAGGA 22678 Query 19173 TTCGAGATTGGCAGCGGGTT 19192 || ||||| || |||||| Sbjct 22679 TTTGAGATCGGGTCCGGGTT 22698 >seq1000 Length=18647 Score = 89.7 bits (98), Expect = 6e-12 Identities = 184/268 (69%), Gaps = 7/268 (3%) Strand=Plus/Minus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 || ||||| | |||||||| ||| ||| || | | || |||||||| || |||||| Sbjct 12380 CCCTCGTCACAACTGATCAATTCATTGGAGAAAGTCAATCCAGGCATGAGCCCTCGCTTC 12321 Query 869240 TTGAGCCAAAAGATGGC-GCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 |||| ||||||||| || ||| || ||| || || || ||||| || || || ||| Sbjct 12320 TTGATCCAAAAGATAGCTGCA-AATGAGCCGGAAAAGAAAATGCCTTCAACACAGGAAAA 12262 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGT-CGAGGCCCTCCTTGTTGATCCACTTCATCGCCC 869357 | | || ||||| || || | |||| | || | | ||||| ||||||||| Sbjct 12261 TGCCAAAAGACGCTCAGCGAACGACCGCGAG-CGGTC---GGTAATCCATGTCATCGCCC 12206 Query 869358 AGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTT 869417 | || ||||| ||| |||| | ||||| || ||||| ||| || || | |||| | Sbjct 12205 ATTCTGCCTTCTTCTTCACGCAAGGCACAGTTTCGATAGCGTTGAAAAGTAAGGCCTTCT 12146 Query 869418 CGGCCGGGTCCTTGACATAGGTGTCGAT 869445 | || || ||| ||||||||||| Sbjct 12145 CCTTGGGATCGGTGATGTAGGTGTCGAT 12118 >seq468 Length=13075 Score = 87.8 bits (96), Expect = 2e-11 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 1592218 CGATCTTGGGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCG 1592277 |||| | || |||||| | || ||||||||||||||||||||| |||| ||||||||||| Sbjct 10853 CGATGTCGGCTGCAAGACGGTAGCCAACATGATCAAGGGCAAGACGCCAGAGGAGATCCG 10912 Query 1592278 CAAGACCTTTAACATC 1592293 |||| ||| |||||| Sbjct 10913 CAAGCTCTTCAACATC 10928 >seq467 Length=38493 Score = 87.8 bits (96), Expect = 2e-11 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 1592218 CGATCTTGGGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCG 1592277 |||| | || |||||| | || ||||||||||||||||||||| |||| ||||||||||| Sbjct 2505 CGATGTCGGCTGCAAGACGGTAGCCAACATGATCAAGGGCAAGACGCCAGAGGAGATCCG 2446 Query 1592278 CAAGACCTTTAACATC 1592293 |||| ||| |||||| Sbjct 2445 CAAGCTCTTCAACATC 2430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106261600279998