Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001661215.1_202016-05-11] 10,694 sequences; 59,384,214 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq32 158 2e-32 seq1000 118 2e-20 seq179 104 4e-16 seq1710 93.3 7e-13 seq434 87.8 3e-11 >seq32 Length=1481398 Score = 158 bits (174), Expect = 2e-32 Identities = 233/327 (71%), Gaps = 5/327 (2%) Strand=Plus/Plus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 ||||||||||| || || | || ||| ||| ||||| ||||| | ||| |||||| Sbjct 1082068 CCTTCGTCGCGGCTAATGAGCTCATTGGAAAAAGTCAGGCCAGGCATCAAGCCTCGCTTC 1082127 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 || | ||| ||||||| |||| ||||||||| |||||||| || || || ||||| Sbjct 1082128 TTCATCCAGAAGATGGACGCGAAAGAGCCCGAGAAGAAGATGCCTTCAACAGCAGCAAAC 1082187 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCAC 794520 | || | || || ||||||| | | | || | |||||| |||| ||||| Sbjct 1082188 GCCACCAAGCGTTCACCAAAAGTTGACCGTCGGTC---GGAGATCCAGTTCAGTGCCCAG 1082244 Query 794521 TCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCG-CGAAAGAGGTGGTCCTTCTC 794579 |||||||| | | || | || | || || | |||| ||||| |||| || || Sbjct 1082245 TCTGCCTTGCGCTTGACACACGGAATGGTCTCCACGGCGTCGAAA-AGGTACTCGCGTTC 1082303 Query 794580 GACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTC 794639 | | | |||||||| |||||||||||||| ||||| || ||||||||||| ||||| || Sbjct 1082304 GGCAGCGTCCTTGATATAGGTGTCGATGAGAAGCGAATACGTCTCTGAGTGAATGTTCTC 1082363 Query 794640 GATGGCGATCTGGAAGCCATAAAAGCA 794666 || ||| ||||||||||| || || Sbjct 1082364 CATCATGATTTGGAAGCCATAGAAACA 1082390 Score = 98.7 bits (108), Expect = 2e-14 Identities = 143/202 (71%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 ||| ||||||||| | || || |||||| |||||| ||||| |||||||||| | Sbjct 1081690 TGATGCCCGCCTTCGAGTAGTCTGAGACGCGCTTCTCGAAGAAGTTTGTCTTGCCCTGCA 1081749 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010 | ||||||| ||||| | ||| ||||| | || || ||| || |||| Sbjct 1081750 GTGAGATCATGTCCATGAAGTCGAATGGGTTTGTCGAGTTATACAACTTGTCATTTCCGA 1081809 Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070 | | | || || |||||||| || ||||||||||| || ||||| | | | || |||| Sbjct 1081810 GGGCAACGAGGAGACGGTCGGCAACAAATTCAATGTATTGACACATCAAGTCAGCATTCA 1081869 Query 794071 TGCCGATGAGCGCCACGGGCAG 794092 |||| |||||| ||| ||||| Sbjct 1081870 TGCCAATGAGCTTCACTGGCAG 1081891 >seq1000 Length=18647 Score = 118 bits (130), Expect = 2e-20 Identities = 223/326 (68%), Gaps = 4/326 (1%) Strand=Plus/Minus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 || ||||| | |||||||||||| ||| || | || |||||||| || |||||| Sbjct 12380 CCCTCGTCACAACTGATCAATTCATTGGAGAAAGTCAATCCAGGCATGAGCCCTCGCTTC 12321 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 |||| ||||||||| || || ||| || || || ||||| || || || ||| Sbjct 12320 TTGATCCAAAAGATAGCTGCAAATGAGCCGGAAAAGAAAATGCCTTCAACACAGGAAAAT 12261 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCAC 794520 | | || ||||| || || | | || || | | ||||| |||||||||| Sbjct 12260 GCCAAAAGACGCTCAGCGAACGACCGCGAGCGGTC---GGTAATCCATGTCATCGCCCAT 12204 Query 794521 TCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCG 794580 |||||||| ||| |||| | ||||| || ||||| ||| || || | ||||||| Sbjct 12203 TCTGCCTTCTTCTTCACGCAAGGCACAGTTTCGATAGCGTTGAAAAGTAAGGCCTTCTCC 12144 Query 794581 ACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCG 794640 || || ||| |||||||||||| | | ||||| || || || || | ||||| Sbjct 12143 TTGGGATCGGTGATGTAGGTGTCGATTAACAAGGAGTATGTTTCAGAATGAACATTTTCA 12084 Query 794641 ATGGCGATCTGGAAGCCATA-AAAGC 794665 || || ||||||| |||| ||||| Sbjct 12083 ATCATGACCTGGAAGGCATAGAAAGC 12058 >seq179 Length=47363 Score = 104 bits (114), Expect = 4e-16 Identities = 139/191 (73%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 793905 GCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCC 793964 ||||||||| | || || ||| |||||||||||||| || ||||| ||||||| ||| Sbjct 9700 GCATACTCGGCGACCCGTTTCTCAAAAAAGTTGGTCTTTCCTTCGAGGGAGATCATGTCC 9641 Query 793965 ATCCACGGGAACGGGTTGGCCGTCA-GGTAGTGCTTCTCGCACCCGAGCGACGCAAGCAG 794023 || | || ||||| || || || |||||||| ||||||| || | ||| Sbjct 9640 ATGAAGTCAAAAGGGTT-TTCGACATGGAAGTGCTTCGAAAGGCCGAGCGCAGCTAACAG 9582 Query 794024 GCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGC 794083 | ||| || || || || |||||| | ||||||| |||||||||| ||||| || || Sbjct 9581 TCTGTCAGCCACAAACTCGATGTACCGTTTCATGAGGTCGGCGTTCATACCGATCAGAGC 9522 Query 794084 CACGGGCAGCG 794094 ||||||| || Sbjct 9521 TACGGGCAACG 9511 >seq1710 Length=21282 Score = 93.3 bits (102), Expect = 7e-13 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 1485604 GCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCGAT 1485663 |||||||| ||||||| |||| || |||||||| || ||| | ||| | ||||| | Sbjct 19764 GCCTCGGTCGCGATGCGCTCGAAGATATCGTTGACGAAGCTGTTGAGGATAGCCATCGCT 19823 Query 1485664 TTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 ||||||||||| ||| ||||||||| ||||||||||| || Sbjct 19824 TTGTTGGAGATACCCGTGTCGGGGTGGACCTGCTTGAGGAC 19864 >seq434 Length=244965 Score = 87.8 bits (96), Expect = 3e-11 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 2070133 AACGCGTCGGCCAGGCCCTGCACGCCGACGCCCATCGGCCGGTGGCGCAGGTTCGAGTGC 2070192 || ||||||||||| |||||||| |||| || || || || ||||||| ||| || || Sbjct 86685 AAGGCGTCGGCCAGACCCTGCACACCGATTCCGATGGGTCGATGGCGCATGTTTGACCGC 86744 Query 2070193 CGGGCCTCGGGCACCGGGTAGTGGTTGATGTCGATCACGCGGTTGAGGTTG 2070243 || ||||| || || || |||| ||||| |||||| || || || || ||| Sbjct 86745 CGAGCCTCCGGAACAGGATAGTAGTTGACGTCGATGACTCGATTCAGATTG 86795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915108830444666