Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001661215.1_202016-05-11]
10,694 sequences; 59,384,214 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq2021 100 2e-16
seq9206 96.9 2e-15
seq7290 91.5 1e-13
seq7289 87.8 1e-12
seq1422 84.2 1e-11
seq1421 84.2 1e-11
seq106 82.4 5e-11
>seq2021
Length=7336
Score = 100 bits (110), Expect = 2e-16
Identities = 147/208 (71%), Gaps = 0/208 (0%)
Strand=Plus/Minus
Query 34770 CCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCA 34829
||| ||||| |||||||||||||||||| || || ||||| | | ||| | || ||||
Sbjct 265 CCAAGTGAAGGGTGCTCTCCTTCTGAATATTGTAATCCGACAAAGTACGCCCGTCCTCCA 206
Query 34830 GTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTA 34889
||||| ||||| ||||| || || |||||||| | || | |||||||| || | |
Sbjct 205 ACTGCTTCCCGGCAAAGATGAGGCGCTGCTGGTCAGGAGGAATGCCCTCCTTATCCTGAA 146
Query 34890 TTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTC 34949
| || || || | |||| || | |||||| || | || || |||||||
Sbjct 145 TCTTCGCCTTCACATTGTCAATCGTATCCGAAGACTCGACTTCCAACGTGATCGTCTTTC 86
Query 34950 CCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|||| | ||||| || ||||| |||||
Sbjct 85 CCGTCAAAGTCTTCACGAAGATTTGCAT 58
>seq9206
Length=299
Score = 96.9 bits (106), Expect = 2e-15
Identities = 89/113 (79%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 34772 AGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGT 34831
||||||| ||| ||||||||||||||| || || || || |||| |||| |||||
Sbjct 173 AGGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGAAAGAGTGCGACCATCTTCCAGC 114
Query 34832 TGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
||||||||||||||||||| || || ||||| | || | |||||||||||
Sbjct 113 TGCTTTCCGGCGAAGATCAAGCGCTGTTGGTCAGGGGGGATACCCTCCTTGTC 61
>seq7290
Length=746
Score = 91.5 bits (100), Expect = 1e-13
Identities = 70/83 (84%), Gaps = 0/83 (0%)
Strand=Plus/Plus
Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846
|||||||||||||||||||| |||||| | || | || || || |||||||||||||||
Sbjct 1 TCCTTCTGAATGTTATAGTCAGATAGGGTTCGTCCGTCCTCGAGCTGCTTTCCGGCGAAG 60
Query 34847 ATCAGTCGTTGCTGGTCTTGCGG 34869
|| || ||||||||||| ||||
Sbjct 61 ATAAGACGTTGCTGGTCGGGCGG 83
>seq7289
Length=746
Score = 87.8 bits (96), Expect = 1e-12
Identities = 69/83 (83%), Gaps = 0/83 (0%)
Strand=Plus/Plus
Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846
|||||||||||||||||||| || ||| | || | || || || |||||||||||||||
Sbjct 1 TCCTTCTGAATGTTATAGTCAGAAAGGGTTCGTCCGTCCTCGAGCTGCTTTCCGGCGAAG 60
Query 34847 ATCAGTCGTTGCTGGTCTTGCGG 34869
|| || ||||||||||| ||||
Sbjct 61 ATAAGACGTTGCTGGTCGGGCGG 83
>seq1422
Length=2909
Score = 84.2 bits (92), Expect = 1e-11
Identities = 81/104 (78%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| || || |||| |||| ||| ||||||||||| ||||| || ||| | ||| ||||
Sbjct 2837 AGCACAAGATGAAGGGTGGACTCTTTCTGAATGTTGTAGTCTGAGAGGGTACGCCCATCT 2778
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGG 34869
|| || ||||| ||||| |||||||| || || ||||| ||||
Sbjct 2777 TCAAGCTGCTTCCCGGCAAAGATCAGACGCTGTTGGTCGGGCGG 2734
>seq1421
Length=2902
Score = 84.2 bits (92), Expect = 1e-11
Identities = 81/104 (78%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| || || |||| |||| ||| ||||||||||| ||||| || ||| | ||| ||||
Sbjct 2830 AGCACAAGATGAAGGGTGGACTCTTTCTGAATGTTGTAGTCTGAGAGGGTACGCCCATCT 2771
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGG 34869
|| || ||||| ||||| |||||||| || || ||||| ||||
Sbjct 2770 TCGAGCTGCTTCCCGGCAAAGATCAGACGCTGTTGGTCGGGCGG 2727
>seq106
Length=225739
Score = 82.4 bits (90), Expect = 5e-11
Identities = 77/98 (79%), Gaps = 0/98 (0%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||||| ||| | ||| |||||| || ||||| ||||| ||| |||| ||||
Sbjct 79691 AGGACCAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGCTGAGGGTGCGACCATCC 79750
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTC 34863
||||| ||||| |||||||||||||| || ||||||||
Sbjct 79751 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTC 79788
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 325650351439586
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |