Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001661215.1_202016-05-11] 10,694 sequences; 59,384,214 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq9840 120 3e-22 seq2021 93.3 4e-14 seq1000 82.4 7e-11 >seq9840 Length=425 Score = 120 bits (132), Expect = 3e-22 Identities = 147/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || |||||||| | || ||| ||||||||| |||||||| Sbjct 230 GTTGACTCCTTCTGGATGTTGTAATCAGAAAGAGTTCGACC-GTCCTCGAGTTGCTTGCC 172 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| |||| || |||||||| |||||||| ||||| ||||| || |||||| ||| Sbjct 171 GGCGAAAATTAGGCGCTGCTGATCGGGAGGAATGCCCTCCTTATCCTGAATCTTTGCCTT 112 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | ||||||| | |||||| || | |||| || |||||||||| || Sbjct 111 GACATTGTCGATGGTGTCGGAAGACTCCACTTCCAGCGTGATCGTCTTGCCGGTCAATGT 52 Query 133643 TTTTACGAAAATCTGCAT 133660 || || ||||||||||| Sbjct 51 CTTCACAAAAATCTGCAT 34 Score = 114 bits (126), Expect = 1e-20 Identities = 119/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||| ||||||||||| || ||||||| || || || || || || || ||||||||| Sbjct 416 TCCTCAAGCTGCTTGCCGGCAAAAATGAGACGTTGTTGATCAGGCGGAATCCCTTCCTTG 357 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || ||| || ||||| | || | || |||| || || || |||| ||||| | Sbjct 356 TCTTGGATTTTCGCCTTGACGTTGTCGATAGTATCGGAGGATTCGACTTCGAGGGTGATG 297 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCATG 133661 || ||||| ||||||||||| ||||||||||||||| Sbjct 296 GTCTTGCCTGTCAGAGTTTTGACGAAAATCTGCATG 261 >seq2021 Length=7336 Score = 93.3 bits (102), Expect = 4e-14 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 || || | |||| ||| ||||| ||||||||||| || || | |||||| | | Sbjct 263 AAGTGAAGGGTGCTCTCCTTCTGAATATTGTAATCCGACAAAGTACGCCCGTCCTCCAAC 204 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 ||||| || || | ||||| ||||||||||| ||||| ||||| ||||| || ||| Sbjct 203 TGCTTCCCGGCAAAGATGAGGCGCTGCTGGTCAGGAGGAATGCCCTCCTTATCCTGAATC 144 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||| | | |||| ||| || | | ||| || || | |||| || || || Sbjct 143 TTCGCCTTCACATTGTCAATCGTATCCGAAGACTCGACTTCCAACGTGATCGTCTTTCCC 84 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 |||| ||| || ||||| || ||||| Sbjct 83 GTCAAAGTCTTCACGAAGATTTGCAT 58 >seq1000 Length=18647 Score = 82.4 bits (90), Expect = 7e-11 Identities = 158/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 120639 CAGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGT 120698 || |||||| ||||| || || ||||||||||| | |||| || ||| || || Sbjct 12405 CAAGCACGCGAAGTCGGTATGGAGGCCCTCGTCACAACTGATCAATTCATTGGAGAAAGT 12346 Query 120699 CAGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAA 120758 || || ||||||| ||| | ||||||| | || || || ||||| ||| ||||| Sbjct 12345 CAATCCAGGCATGAGCCCTCGCTTCTTGATCCAAAAGATAGCTGCAAATGAGCCGGAAAA 12286 Query 120759 GAACACGCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCT 120818 ||| | ||| || || || ||| || | | ||||| || |||| ||| | || Sbjct 12285 GAAAATGCCTTCAACACAGGAAAATGCCAAAAGACGCTCAGCGAACG--ACCG-CGAGCG 12229 Query 120819 GTCG---ATCCACTTCATGGCCCACTCGGCCTTTTTGCGCACGCACGGCA 120865 |||| ||||| |||| ||||| || ||||| || |||||| |||| Sbjct 12228 GTCGGTAATCCATGTCATCGCCCATTCTGCCTTCTTCTTCACGCAAGGCA 12179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483356178724560