Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001661215.1_202016-05-11] 10,694 sequences; 59,384,214 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq32 214 3e-49 seq1000 113 6e-19 seq252 98.7 1e-14 seq448 86.0 9e-11 >seq32 Length=1481398 Score = 214 bits (236), Expect = 3e-49 Identities = 386/546 (71%), Gaps = 19/546 (3%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| |||||||| || ||||| ||||| || |||||||| || ||||| | |||| Sbjct 1082604 GATCTGGCAAATGTAC-AAGAAGGCTGAGGCGTCGTTTTGGACTGCAGAGGAAATGGACC 1082546 Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGTCGC---TGAGCGACGACGAGCGCCATTTCATCA 1455891 || || | ||||| | | | | |||| ||||||||||||||||| Sbjct 1082545 TCTCGAAAGATATTCATGACTGGACCACCCGCCTTAACGACAACGAGCGCCATTTCATCT 1082486 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 || |||||||| ||| ||||| ||| ||||| || || ||||||||| | || Sbjct 1082485 CCCATGTCCTCGC-TTTCTTCGCAGCCTCGGATGGTATTGTCAACGAGAACCTTGTCGAG 1082427 Query 1455952 CGCTTTATGAAAGAGGTCCAA-TTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGC 1456010 |||||| || ||||||||| ||||| ||||| || | || || || ||||| ||| Sbjct 1082426 CGCTTTTCCAACGAGGTCCAAGTTGCC-GAGGCTCGATGTTTCTATGGCTTCCAAATCAT 1082368 Query 1456011 CATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCC 1456070 || || ||||| ||||| || || || ||||| || ||||||||||| |||||||| | Sbjct 1082367 GATGGAGAACATTCACTCAGAGACGTATTCGCTTCTCATCGACACCTATATCAAGGACGC 1082308 Query 1456071 GGTCGAGAAGGACCACCTCTTTCG-CGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGG 1456129 | ||| || |||| ||||| |||| | || || | |||| || | | |||| Sbjct 1082307 TGCCGAACGCGAGTACCT-TTTCGACGCCGTGGAGACCATTCCGTGTGTCAAGCGCAAGG 1082249 Query 1456130 CCGACTGGGCGATGAAGTGGATCAAC-AAGGAGGGCCTCGACACTTTGCCGAGCGGCTCG 1456188 | |||||||| |||| |||||| | | || || || || |||| || || | | Sbjct 1082248 CAGACTGGGCACTGAACTGGATCTCCGACCGACGG--TCAAC-TTTTGGTGAACGCTTGG 1082192 Query 1456189 TCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCG-CCATCTTTTGG 1456246 | | ||||| || || || |||||||| ||||||||| |||| ||| ||||||| ||| Sbjct 1082191 TGGCGTTTGCTGCTGTTGAAGGCATCTTCTTCTCGGGCTCTTTC-GCGTCCATCTTCTGG 1082133 Query 1456247 CTCAAGAAGCGCGGCCTCATGCCCGGTCT-TCTGCTTTAGCAACGAATTTATCAGTCGCG 1456305 | |||||||| ||| | ||||| || || || ||| ||| || | || || |||| Sbjct 1082132 ATGAAGAAGCGAGGCTTGATGCCTGGCCTGACT--TTTTCCAATGAGCTCATTAGCCGCG 1082075 Query 1456306 ACGAAG 1456311 |||||| Sbjct 1082074 ACGAAG 1082069 Score = 86.0 bits (94), Expect = 9e-11 Identities = 145/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 1456571 CTGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTG 1456630 ||||| ||| |||||| |||||||| || | | ||||| || ||||||||| |||| Sbjct 1081891 CTGCCAGTGAAGCTCATTGGCATGAATGCTGACT-TGATGTGTCAATACATTGAA-TTTG 1081834 Query 1456631 TCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCG 1456690 | |||||||| || |||| || ||||| || ||| || || | ||||| Sbjct 1081833 TTGCCGACCGTCTCCTCGTTGCCCTCGG-AAATGACAAGTTGTATAACTCGACAAACCCA 1081775 Query 1456691 TTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGTG 1456750 ||| | ||||| ||||||| || |||||||||| ||||| |||||| ||||| Sbjct 1081774 TTCGACTTCATGGACATGATCTCACTGCAGGGCAAGACAAACTTCTTCGAGAAGCGCGTC 1081715 Query 1456751 GC-GAGTACGCCAAGGCCGGCGTCA 1456774 | || ||| | ||||| ||| ||| Sbjct 1081714 TCAGACTACTCGAAGGCGGGCATCA 1081690 >seq1000 Length=18647 Score = 113 bits (124), Expect = 6e-19 Identities = 217/313 (69%), Gaps = 8/313 (3%) Strand=Plus/Plus Query 1456000 TTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTAC 1456059 |||||| || || ||||| | || |||||||| ||||| | | |||||||||||| Sbjct 12070 TTCCAGGTCATGATTGAAAATGTTCATTCTGAAACATACTCCTTGTTAATCGACACCTAC 12129 Query 1456060 GTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTG 1456119 ||| || || ||||||| | || || ||| ||||| || ||||| | ||| Sbjct 12130 ATCACCGATCCCAAGGAGAAGGCCTTACTTTTCAACGCTATCGAAACTGTGCCTTGCGTG 12189 Query 1456120 AGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGC-CTCGACACTTTGCC 1456178 | ||| ||||| || |||||||||| ||||| | | || || | || || || Sbjct 12190 AAGAAGAAGGCAGAATGGGCGATGACATGGATTACC---GACCGCTCGCGGTCGTTCGCT 12246 Query 1456179 GAGCGGCTCGTCGGCTTTGCC-GCGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGC-GC 1456236 ||||| || | | ||| || | || || ||||| || || || ||| || ||| || Sbjct 12247 GAGCGTCTTTTGGCATTTTCCTGTGTTGAAGGCATTTTCTTTTCCGGCTCATT-TGCAGC 12305 Query 1456237 CATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTA 1456296 ||||||||| |||||||||| || |||||||| || || || ||| ||||| | Sbjct 12306 TATCTTTTGGATCAAGAAGCGAGGGCTCATGCCTGG-ATTGACTTTCTCCAATGAATTGA 12364 Query 1456297 TCAGTCGCGACGA 1456309 ||||| | ||||| Sbjct 12365 TCAGTTGTGACGA 12377 >seq252 Length=26573 Score = 98.7 bits (108), Expect = 1e-14 Identities = 114/151 (75%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 165750 GCAGACCTGGTCACGTGGGGCGCCGTCGGTGCGCGCACCACCGAGAGCCAGGTGCACCGC 165809 || ||||| || |||||||||| ||||||| ||||| || ||| ||||||||||||| Sbjct 1645 GCGGACCTAGTATCGTGGGGCGCAATCGGTGCACGCACGACAGAGTCCCAGGTGCACCGC 1704 Query 165810 GAGATGGCGTCGGCGCTGCCGCTGCCCATTGGCTTCAAAAACAGCACCGACGGCAGCGTG 165869 ||| | | || ||||| || |||||| ||||||||||| ||| || || || ||| Sbjct 1705 GAGCTCACATCTGCGCTATCGATGCCCACGGGCTTCAAAAATTCCACGGATGGGAGTGTG 1764 Query 165870 GCGACGGCCCTCGATGCCGTG-CGCACTGCC 165899 | || || | |||| |||| ||| ||||| Sbjct 1765 GGGATCGCGATTGATG-CGTGCCGCGCTGCC 1794 >seq448 Length=26486 Score = 86.0 bits (94), Expect = 9e-11 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 165750 GCAGACCTGGTCACGTGGGGCGCCGTCGGTGCGCGCACCACCGAGAGCCAGGTGCACCGC 165809 || ||||| || |||||||||| | ||||| ||||| || ||| ||||||||||||| Sbjct 1647 GCGGACCTAGTGTCGTGGGGCGCGATTGGTGCACGCACGACTGAGTCCCAGGTGCACCGC 1706 Query 165810 GAGATGGCGTCGGCGCTGCCGCTGCCCATTGGCTTCAAAAACAGCACCGACGGCAGCGTG 165869 ||| | | || |||||| | |||||| ||||| ||||| ||| || || || ||| Sbjct 1707 GAGCTCACATCTGCGCTGTCAATGCCCACGGGCTTTAAAAATTCCACGGATGGGAGTGTG 1766 Query 165870 GCGACGGCCCTCGATGCCGTGCGCACTGCC 165899 | || || | ||||| ||| ||||| Sbjct 1767 GGGATCGCGATTGATGCATGCCGCGCTGCC 1796 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7176779744044428