Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001661215.1_202016-05-11] 10,694 sequences; 59,384,214 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq3003 102 1e-16 seq3004 98.7 1e-15 >seq3003 Length=7408 Score = 102 bits (112), Expect = 1e-16 Identities = 246/369 (67%), Gaps = 4/369 (1%) Strand=Plus/Plus Query 161174 GAGATCTACAACCTAGGGGCACAGAGTCATGTGAAAGTATCTTTCGAGGAACCTGAATAT 161233 |||||||||||||| || || ||| || || ||||| |||||||| | ||||| Sbjct 5239 GAGATCTACAACCTCGGTGCTCAGTCGCACGTTAAAGTCTCTTTCGAAATGGCCGAATAC 5298 Query 161234 ACAGCACAGACTGATGCTCTGGGAACCCTAAGAGTATTGGAGGCAGTTCGTCTCCTAGGT 161293 || | | | || | ||||| ||||| | | | || || || || | ||| | Sbjct 5299 ACTGGAGACGTCGACGGCCTGGGCACCCTGCGCTTGCTCGACGCTGTCCG-CACCTGCGG 5357 Query 161294 A--TGACAGATAGGGTCCGTATCTACCAGGCATCCACCAGTGAGTTGTATGGGTTGGTAC 161351 | ||| | | | || ||||||| || ||||| ||| |||| || ||| Sbjct 5358 ACTTGAAAAGCACGTCAAGT-TCTACCAAGCGTCCACATCCGAGCTGTACGGCAAGGTCG 5416 Query 161352 AAGAGACACCACAGAAAGAAACAACACCTTTCTACCCACGATCTCCATATGGCGTAGCTA 161411 |||||||| |||| || || || || |||||||| || ||||| || ||| || | Sbjct 5417 TCGAGACACCGCAGAGCGAGACGACGCCCTTCTACCCGCGCTCTCCCTACGGCTGCGCCA 5476 Query 161412 AACTCTATGGATATTGGATTGTAAAGAACTACAGAGAGAGTTATGGGATGCACGCCAGTA 161471 | ||||| | || ||||| || |||||| | ||| ||||| ||| ||| | | Sbjct 5477 AGCTCTACGCCTACTGGATCGTGGTCAACTACCGCGAGGCCTATGGCATGTTCGCGTGCA 5536 Query 161472 GTGGTATTCTATTCAACCATGAGTCACCACGACGGGGTGAGACTTTCGTAACCCGTAAGA 161531 ||| || || |||||||||||| || || ||||| ||| ||||| || | |||| Sbjct 5537 ATGGGATCCTGTTCAACCATGAGAGTCCCCGCCGGGGCCGGACATTCGTGACGAGGAAGA 5596 Query 161532 TTACTAGGG 161540 |||| |||| Sbjct 5597 TTACGAGGG 5605 >seq3004 Length=3380 Score = 98.7 bits (108), Expect = 1e-15 Identities = 285/435 (66%), Gaps = 4/435 (1%) Strand=Plus/Plus Query 161108 CTCCACTACGGGGATTTGACTGACTCCCTGAACATAGTCTCTATCATTAAGGAAGTAGAA 161167 || |||||||| ||| ||| || | ||| | || | ||||| | |||| | Sbjct 1149 CTGCACTACGGTGATCTGAGCGATAGCACCAACCTCGTGTACATCATCGCGCAAGTCCAG 1208 Query 161168 CCTGATGAGATCTACAACCTAGGGGCACAGAGTCATGTGAAAGTATCTTTCGAGGAACCT 161227 ||| |||||||||||||| || || ||| || || ||||| |||||||| | Sbjct 1209 CCTACGGAGATCTACAACCTCGGTGCCCAGTCGCACGTCAAAGTCTCTTTCGAAATGGCC 1268 Query 161228 GAATATACAGCACAGACTGATGCTCTGGGAACCCTAAGAGTATTGGAGGCAGTTCGTCTC 161287 ||||| || | | | || | ||||| ||||| | | | || || || || | | Sbjct 1269 GAATACACTGGAGACGTCGACGGCCTGGGTACCCTGCGCTTGCTCGACGCTGTCCG-CAC 1327 Query 161288 CTAGGTA--TGACAGATAGGGTCCGTATCTACCAGGCATCCACCAGTGAGTTGTATGGGT 161345 || | | ||| | | | || ||||||| || ||||| ||| |||| || Sbjct 1328 CTGCGGACTTGAAAAGCACGTCAAGT-TCTACCAAGCGTCCACATCCGAGCTGTACGGCA 1386 Query 161346 TGGTACAAGAGACACCACAGAAAGAAACAACACCTTTCTACCCACGATCTCCATATGGCG 161405 ||| ||||||||||||| || || || || |||||||| || ||||| ||||| Sbjct 1387 AGGTCGTCGAGACACCACAGAGCGAGACGACGCCCTTCTACCCGCGCTCTCCCTATGGAT 1446 Query 161406 TAGCTAAACTCTATGGATATTGGATTGTAAAGAACTACAGAGAGAGTTATGGGATGCACG 161465 || || ||||| | || ||||| || |||||| | ||| ||||| ||| || Sbjct 1447 GCGCCAAGCTCTACGCCTACTGGATCGTGGTCAACTACCGCGAGGCCTATGGCATGTTCG 1506 Query 161466 CCAGTAGTGGTATTCTATTCAACCATGAGTCACCACGACGGGGTGAGACTTTCGTAACCC 161525 | | | ||| || || |||||||| ||| || || ||||| ||| ||||| || Sbjct 1507 CGTGCAATGGGATCCTGTTCAACCACGAGAGTCCCCGCCGGGGCCGGACATTCGTGACGA 1566 Query 161526 GTAAGATTACTAGGG 161540 | ||||| || |||| Sbjct 1567 GGAAGATAACGAGGG 1581 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729832026660720