Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001661215.1_202016-05-11] 10,694 sequences; 59,384,214 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq32 156 6e-33 seq179 138 2e-27 >seq32 Length=1481398 Score = 156 bits (172), Expect = 6e-33 Identities = 376/566 (66%), Gaps = 6/566 (1%) Strand=Plus/Minus Query 39608 AACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAA 39667 |||| || || ||||| || || | |||||| |||| |||||| | || || ||| Sbjct 1084277 AACAATAGACATGCGAAATCGGTGTGCAAGCCCTCGTCTCGACTAATAAGCTCATTGGAA 1084218 Query 39668 AATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCA 39727 ||||| || |||||||| |||||||| || |||| ||| ||||| | ||||| || ||| Sbjct 1084217 AATGTCAGGCCAGGCATAAGACCACGTTTCTTGATCCAGAATATTGAGGCAAACGACCCA 1084158 Query 39728 GAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCA 39787 |||||||| || ||||| || || ||||| ||||| || | || || | ||| || Sbjct 1084157 GAAAAGAATATCCCTTCGACAGCAGCAAAGGCAACTAGACGTTCCGCGAAGGTTGAATGT 1084098 Query 39788 TTATGT---ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCT 39844 || | | ||||| || | |||||||||||||| ||| | ||||| || || ||| Sbjct 1084097 TTGTCTGAAATCCATTTTAGAGCCCAATCAGCTTTGCGCTTGATGCAAGGAATGGTGTCT 1084038 Query 39845 ATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGA 39904 || || | || || | || | ||| || | || ||| || | || Sbjct 1084037 ATGGCGTCGAAAAGGTGGGCCCGCTCCTGCGGATCCTTGATGTAGCCATCGATAAGCAAC 1083978 Query 39905 CTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCT 39964 |||| |||| |||||||| || || ||| || ||||| || || || | | || Sbjct 1083977 GAATACGTTTCGGAATGGATATTCTCCATCATGATTTGAAAGCCATAGAAGGAACGCGCC 1083918 Query 39965 TCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCA 40024 || | | || || || |||||| ||||| | | || || || || || ||||| Sbjct 1083917 TCGGGTACCTGCACTTCACCACAAAACCTTTCGACGAGGTTCTCGTTTACAATGCCATCT 1083858 Query 40025 CTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATC-GGGTGTCAATTT 40083 || ||||| || || | ||||| |||||||| ||||| ||| ||| Sbjct 1083857 GAGGCCGCAAAGAAAGCAAGAACATGCGATATAAAATACCGCTCATCATGGTTGAGATTG 1083798 Query 40084 A--TTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCC 40141 | |||||||| || || | || | || | ||||||||||||||| || || || Sbjct 1083797 AAGTTCCAGTCCACGAAGTCATGGGAAAGGTCAAGTTCTTCAGCTGTCCAGAATGAGGCT 1083738 Query 40142 TCTGCCTTTTTGTACATGTTCCATAT 40167 | || || ||||| | | |||||| Sbjct 1083737 TGAGCTTTCTTGTAGAATTGCCATAT 1083712 >seq179 Length=47363 Score = 138 bits (152), Expect = 2e-27 Identities = 301/442 (68%), Gaps = 13/442 (3%) Strand=Plus/Minus Query 39617 CAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGT 39676 || |||||||| |||||| || |||||||| || || | || || || || || | | Sbjct 9361 CATGCGAAGTCGGTATGTAGACCTTCATCTCTGCTGATAAGCTCATTGGAGAAAGTCAAT 9302 Query 39677 CCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAG 39736 || ||||| | |||||| || || |||||||| ||||| || || || |||||||| ||| Sbjct 9301 CCTGGCATCACACCACGTTTCTTCAGCCAAAAAATGGCCGCGAAGGAACCAGAAAAAAAG 9242 Query 39737 ATGCCTTCTACTGCTGCAAATGCAAC-AAGTCTCTCTCC----GTAACTTGTATCATTAT 39791 |||||||| || ||||| || || | || || ||| | ||| | || | Sbjct 9241 ATGCCTTCCACGCAGGCAAAGGCTACGAGGTGGCT-TCCAAAGGCAAC-CGCGGAATCTT 9184 Query 39792 GTATCCACTTCTGTGCCCAATCAG-CTTTCTTCTTTACACAAGGCATTGTTTCTATAGCA 39850 ||||| ||| ||||||||| | ||||||| || | || ||||||||| | ||| Sbjct 9183 CGATCCATTTCAATGCCCAATCCGCCTTTCTT-TTGATGCACTCCATTGTTTCAAGCGCA 9125 Query 39851 TTAAAGAGA--TAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTAT 39908 | |||||| |||| || || | ||| |||||| || || || | | | || Sbjct 9124 TCGAAGAGATGTAATCGTTCTC--GGGTGTCTGCAACATAGGTGTCGATGAGTAAAGAAT 9067 Query 39909 ACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAG 39968 || |||| ||||||| |||||| ||| |||||||| |||||||| | | ||||| Sbjct 9066 ACGTTTCGGAATGGACGTTTTCGATCATAATCTGAAAACCGTAAAACGAGCGAGCTTCCA 9007 Query 39969 TAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAG 40028 | | || |||| || ||| | | ||||| ||||| || || ||| | Sbjct 9006 AAGGCCCAATTTCGCAACAGAAGTTTTGTACAAGGTTTTCGTTCACGATGCCGTCAGACG 8947 Query 40029 CGGCAAAAAATGCCAATACATG 40050 | ||||||||||| | ||||| Sbjct 8946 CAGCAAAAAATGCAAGGACATG 8925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686816977466160