Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001661215.1_202016-05-11] 10,694 sequences; 59,384,214 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq32 129 5e-25 seq925 122 7e-23 seq1000 116 3e-21 seq179 109 4e-19 seq247 105 5e-18 >seq32 Length=1481398 Score = 129 bits (142), Expect = 5e-25 Identities = 374/567 (66%), Gaps = 24/567 (4%) Strand=Plus/Minus Query 43730 ATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTG 43789 || |||||||||||||| || || ||||||| |||||||| ||||| ||| | || | Sbjct 1082603 ATCTGGCAAATGTACAAGAAGGCTGAGGCGTCGTTTTGGACTGCAGAGGAAATGGACCTC 1082544 Query 43790 ACTAAAGACTTAGCACATTGGATT----GCATTAAAACCACAA-GAAAAACATTTTATAT 43844 | ||||| | | |||| || |||| | |||| || ||||| || | Sbjct 1082543 TCGAAAGATATTCATGACTGGACCACCCGCCTTAA--CGACAACGAGCGCCATTTCATCT 1082486 Query 43845 CTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTC 43904 | || | || || || || || || || || ||||| || || | || | Sbjct 1082485 CCCATGTCCTCGCTTTCTTCGCAGCCTCGGATGGTATTGTCAACGAGAACCTTGTCGAGC 1082426 Query 43905 GGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCA 43964 | ||| | | || || ||| | | || || |||||||| ||||| || ||||| | Sbjct 1082425 GCTTTTCCAACGAGGTCCAAGTTGCCGAGGCTCGATGTTTCTATGGCTTCCAAATCATGA 1082366 Query 43965 TAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGG-- 44022 | || || ||||| || || | ||| ||||| || || || || ||||| || | Sbjct 1082365 TGGAGAACATTCACTCAGAGACGTATTCGCTTCTCATCGACACCTATATCAAGGACGCTG 1082306 Query 44023 --GCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACC-TGCGATTAAACATAA 44079 | ||| || | | | | || | || | || || | || || | | || | || Sbjct 1082305 CCGAACGCGA-GTACC---TTTTCGACGCCGTGGAGACCATTCCGTGTG-TCAAGCGCAA 1082251 Query 44080 AGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATT-----CTTTTGGAGAACGACTT 44134 ||||||||||| || || ||||| | | | || ||||||| ||||| | Sbjct 1082250 GGCAGACTGGGCACTGAACTGGATC--TCCGACCGACGGTCAACTTTTGGTGAACGCTTG 1082193 Query 44135 GTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGG 44194 || |||||||| | ||| |||||||| ||||| || || || || ||| |||| || ||| Sbjct 1082192 GTGGCGTTTGCTGCTGTTGAAGGCATCTTCTTCTCGGGCTCTTTCGCGTCCATCTTCTGG 1082133 Query 44195 TTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGAT 44254 | ||||| ||||| ||||||||||| |||| ||||| |||||| | || || || || Sbjct 1082132 ATGAAGAAGCGAGGCTTGATGCCTGGCCTGACTTTTTCCAATGAGCTCATTAGCCGCGAC 1082073 Query 44255 GAAGGCTTACATTGCGATTTTGCTTGC 44281 ||||| | || ||| ||||| ||| Sbjct 1082072 GAAGGAATGCACACCGACTTTGCATGC 1082046 >seq925 Length=43645 Score = 122 bits (134), Expect = 7e-23 Identities = 295/439 (67%), Gaps = 11/439 (3%) Strand=Plus/Minus Query 43856 GCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAA 43915 || |||||||| || ||| || || || || || || ||||| ||||||||| Sbjct 14112 GCTTTTTTTGCAGCATCCGATGGAATCGTGAACGAGAACTTGGTGGAAAACTTTGCGCAA 14053 Query 43916 GAAGTT--CAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATA 43973 ||||| | || ||||| || | || || || ||||| | || ||||| Sbjct 14052 GAAGTCGGCCCTTTG--GAAGCCCGTTACTTCTACGGCTTTCAGTTCATGATCGAAAACG 13995 Query 43974 TTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGC 44033 | || |||||| |||| ||| |||| || | || ||||| || | |||| ||| Sbjct 13994 TCCACTCGGAAGTGTATTCGCTTTTGATCGACAGTTATATCAAGGACGACAACGA-AAGA 13936 Query 44034 ATCGAT-TGTTTAATGCGATAGAAACAGTACCT-GCGATTAAACATAAAGCAGACTGGGC 44091 | ||| | || |||||||| |||||| | ||| ||| | || | |||||||| ||||| Sbjct 13935 AGCGAACTATTCAATGCGATGGAAACAATTCCTTGCG-TGAAGAAAAAAGCAGATTGGGC 13877 Query 44092 CCTTAAATGGATAAATTCAAATGATT---CTTTTGGAGAACGACTTGTCGCGTTTGCAGT 44148 | | ||||||| | | || | || || |||||| | | || || ||| Sbjct 13876 TTTGACTTGGATAACTGACGAGGAAAGAACGTTCGGTGAACGATTGTTGGCTTTCGCATG 13817 Query 44149 TGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGG 44208 || ||||| ||||||||||| || || || || || || |||||||| |||||| | || Sbjct 13816 CGTAGAAGGGATTTTCTTTTCCGGCTCATTCGCCGCGATCTTTTGGTTGAAGAAAAGGGG 13757 Query 44209 TTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTG 44268 ||||||||| || | |||| |||| ||| | || || || ||||| || | || Sbjct 13756 TTTGATGCCAGGACTATCGTTCGCAAACGAGCTTATCAGCCGAGATGAGGGTCTTCACAC 13697 Query 44269 CGATTTTGCTTGCTTGTTA 44287 ||||| || || ||||| Sbjct 13696 AGATTTCGCGTGTATGTTA 13678 >seq1000 Length=18647 Score = 116 bits (128), Expect = 3e-21 Identities = 224/327 (69%), Gaps = 9/327 (3%) Strand=Plus/Plus Query 43964 ATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGG 44023 || |||||| ||||||| |||| ||| | | || || || ||||||| ||| Sbjct 12082 ATTGAAAATGTTCATTCTGAAACATACTCCTTGTTAATCGACACCTACATCACCGATCCC 12141 Query 44024 CACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACCT-GCGATTAAACATAAAGC 44082 | |||||| | | || || || || ||||| || ||| ||| | || | || || Sbjct 12142 AAGGAGAAGGCCTTACTTTTCAACGCTATCGAAACTGTGCCTTGCG-TGAAGAAGAAGGC 12200 Query 44083 AGACTGGGCCCTTAAATGGATAAATTCAAATGAT-----TCTTTTGGAGAACGACTTGTC 44137 ||| ||||| | | |||||| | | | | | || || | || || ||| | Sbjct 12201 AGAATGGGCGATGACATGGATTAC--CGACCGCTCGCGGTCGTTCGCTGAGCGTCTTTTG 12258 Query 44138 GCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTA 44197 || ||| | ||| ||||||||||||||||| || || ||||| || || |||||| | Sbjct 12259 GCATTTTCCTGTGTTGAAGGCATTTTCTTTTCCGGCTCATTTGCAGCTATCTTTTGGATC 12318 Query 44198 AAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAA 44257 ||||| ||||| | |||||||| ||||| || || ||||| || || ||| |||| || Sbjct 12319 AAGAAGCGAGGGCTCATGCCTGGATTGACTTTCTCCAATGAATTGATCAGTTGTGACGAG 12378 Query 44258 GGCTTACATTGCGATTTTGCTTGCTTG 44284 ||| | ||| ||| || || |||||| Sbjct 12379 GGCCTCCATACCGACTTCGCGTGCTTG 12405 >seq179 Length=47363 Score = 109 bits (120), Expect = 4e-19 Identities = 242/356 (68%), Gaps = 9/356 (3%) Strand=Plus/Plus Query 43931 GAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTAC 43990 ||||| || | ||||| || ||||| ||| || ||||| | ||||| |||| ||| Sbjct 9009 GAAGCTCGCTCGTTTTACGGTTTTCAGATTATGATCGAAAACGTCCATTCCGAAACGTAT 9068 Query 43991 AGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCG-AT-TGTTTAATG 44048 | | || || || || || | ||| | |||||| || || | || ||| Sbjct 9069 TCTTTACTCATCGACACCTATGTTGCAGACA--CCCGAGAACGATTACATCTCTTCGATG 9126 Query 44049 CGATAGAAACAGTACC-TGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGAT---A 44104 || | |||||| | ||| || ||| || || || ||||| | |||||||| | Sbjct 9127 CGCTTGAAACAATGGAGTGC-ATCAAAAGAAAGGCGGATTGGGCATTGAAATGGATCGAA 9185 Query 44105 AATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTC 44164 |||| | | | |||||| | || || || ||||| ||||||||||| || Sbjct 9186 GATTCCGCGGTTGCCTTTGGAAGCCACCTCGTAGCCTTTGCCTGCGTGGAAGGCATCTTT 9245 Query 44165 TTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTG 44224 ||||| || || || |||||||| |||||| | |||||||| ||| ||||||| || ||| Sbjct 9246 TTTTCTGGTTCCTTCGCGGCCATTTTTTGGCTGAAGAAACGTGGTGTGATGCCAGGATTG 9305 Query 44225 ACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTG 44280 || || || |||||| | || || | |||||||| ||||| ||| || || || Sbjct 9306 ACTTTCTCCAATGAGCTTATCAGCAGAGATGAAGGTCTACATACCGACTTCGCATG 9361 >seq247 Length=45445 Score = 105 bits (116), Expect = 5e-18 Identities = 149/206 (72%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 44078 AAAGCAGACTGGGCCCTTAAATGGATAAAT--TCAAATGATTCT-TTTGGAGAACGACTT 44134 ||||| ||||||| | |||||||| ||| || ||| || ||| ||||| | Sbjct 37537 AAAGCGAACTGGGCATTGAAATGGATTAATGATCCAATCCGCCTCTTTCCCGAACGTTTG 37478 Query 44135 GTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGG 44194 || || ||||| |||||||||||||||||| || ||||||||||| || | |||||| Sbjct 37477 GTTGCCTTTGCGTGTGTGGAAGGCATTTTCTTCTCCGGATCGTTTGCAGCAGTCTTTTGG 37418 Query 44195 TTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGAT 44254 | |||||||| || || ||||| || || || ||||| || || |||| || | || Sbjct 37417 ATTAAGAAACGGGGCTT-ATGCCAGGCTTAACTTTTTCGAACGAACTAATCAGCAGAGAC 37359 Query 44255 GAAGGCTTACATTGCGATTTTGCTTG 44280 ||||| | ||| || ||||| || Sbjct 37358 GAAGGACTTCATACGGACTTTGCCTG 37333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397404198317470