Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001661215.1_202016-05-11] 10,694 sequences; 59,384,214 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1000 131 2e-25 seq247 109 7e-19 seq925 107 2e-18 seq4743 91.5 2e-13 seq3003 84.2 3e-11 >seq1000 Length=18647 Score = 131 bits (144), Expect = 2e-25 Identities = 286/420 (68%), Gaps = 10/420 (2%) Strand=Plus/Minus Query 122671 TGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCC 122730 ||||| ||||| || | || | |||||| ||||| | || |||||||| || Sbjct 12386 TGGAGGCCCTCGTCACAACTGATCAATTCATTGGAGAAAGTCAATCCAGGCATGAGCCCT 12327 Query 122731 CGCTTCTTCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 |||||||| | |||| | ||||| ||| ||||| ||||| ||||| || || || ||||| Sbjct 12326 CGCTTCTTGATCCAAAAGATAGCTGCA-AATGAGCCGGAAAAGAAAATGCCTTCAACACA 12268 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAACCATTTCATTGC 122849 | ||| || ||||| || || ||||| || || || | || |||| |||| || Sbjct 12267 GGAAAATGCCAAAAGACGCTCAGCGAACGACCGCGAGCGGTCGGTAATCCATGTCATCGC 12208 Query 122850 CCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC-TTCAAA--TAACTGCTT 122906 ||||| |||||||||| | || || ||||||| ||| || || ||| ||| ||| Sbjct 12207 CCATTCTGCCTTCTTCTTCACGCAAGGCACAGTTTCGATAGCGTTGAAAAGTAAGGCCTT 12148 Query 122907 CTTTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTTCGCCATGAAC 122966 || | | ||| | ||||| |||| || || || |||||||| |||||| Sbjct 12147 CTCCTTGGG---ATCGGTGATGTAGGTGTCGATTAACAAGGAGTATGTTTCAGAATGAAC 12091 Query 122967 CATTTCATT-ATGGCATTGATATGCGTAGAATGAGCGCGCTTCGCTTATCTGAACCTCAT 123025 ||||| | ||| | | || | || ||||| | | ||||| || | |||||| | Sbjct 12090 ATTTTCAATCATGACCTGGA-AGGCATAGAAAGCCCAAGCTTCTCTCGGCGAAACCTCCT 12032 Query 123026 CCGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAGAATGCCA 123085 || ||||| | | ||||| ||||||||||||||| | ||||| || |||| Sbjct 12031 GAGCGAAATTTTCCAGCAAGTTCTCGTTGACAATTCCATCGGACGCCGCAAAAAAAGCCA 11972 >seq247 Length=45445 Score = 109 bits (120), Expect = 7e-19 Identities = 171/237 (72%), Gaps = 7/237 (3%) Strand=Plus/Plus Query 122658 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACC 122717 |||||| ||| || || || || |||| | || ||||| || || || || || Sbjct 37335 GGCAAAGTCCGTATGAAGTCCTTCGTCTCTGCTGATTAGTTCGTTCGAAAAAGTTAAGCC 37394 Query 122718 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGA 122776 |||||| || ||||| ||||| | |||| | | || ||| || || ||||||||||| | Sbjct 37395 TGGCATAAG-CCCCGTTTCTTAATCCAAAAGACTGCTGCA-AACGATCCGGAGAAGAAAA 37452 Query 122777 TACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTG--CATC 122834 | || |||||||||||||| |||| | ||||||| ||| ||| | | || | ||| Sbjct 37453 TGCCTTCCACACACGCAAAGGCAACCAAACGTTCGG-GAAAGAG-GCGGATTGGATCATT 37510 Query 122835 AAACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 122891 || |||||||| |||||| ||||| || | || ||||| || | ||| | ||| || Sbjct 37511 AATCCATTTCAATGCCCAGTTCGCTTTTTCCTGGATACAGGGAATAGTCTCGATAGC 37567 >seq925 Length=43645 Score = 107 bits (118), Expect = 2e-18 Identities = 112/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 ||| ||||||||||||||| ||||| || |||| ||| |||| |||||||| | ||| Sbjct 13699 GTGAAGACCCTCATCTCGGCTGATAAGCTCGTTTGCGAACGATAGTCCTGGCATCAAACC 13758 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 || |||||||||||| | || ||| |||||| ||||| ||||| || || || || || Sbjct 13759 CCTTTTCTTCAACCAAAAGATCGCGGCGAATGAGCCGGAAAAGAAAATCCCTTCTACGCA 13818 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAA 122816 || || || || | ||||| |||| Sbjct 13819 TGCGAAAGCCAACAATCGTTCACCGAA 13845 >seq4743 Length=11411 Score = 91.5 bits (100), Expect = 2e-13 Identities = 200/293 (68%), Gaps = 10/293 (3%) Strand=Plus/Plus Query 182549 ATCTGTCATAATCATAAGACGACCATAGCG-AAGTTCAGAAACATCTTGGTAGTCTTTTC 182607 ||| ||||||||||| || ||||| || || ||| ||| || || ||||| || Sbjct 7358 ATCAGTCATAATCATGAGTCGACCGTACCGCAAGCTCATGGTATTCGTG-TAGTCCTTGT 7416 Query 182608 CTTGTTGAAGACCAAGGATCTTCTTGAGATCATTGAACTCCTGGTT--TGATG-TAAGCT 182664 || || || || | ||||||||||| || | || || | ||| | ||| | ||| Sbjct 7417 TATGCTGCAGCCCCATGATCTTCTTGATATTCTGGATTTCTTCGTTCTTCATGATTTGCT 7476 Query 182665 -GTGCCACCGAAGCGTCCCGAACATTCTTACATTTACCGCGAAGTGGGAACACACCGTAG 182723 ||| | | || || |||||||| | || |||||||| |||||||||||| || Sbjct 7477 CGTGTCGC----GCCTCGCGAACATTGAGCAACTTGCCGCGAAGGGGGAACACACCGAAG 7532 Query 182724 TGATCACGACCAACGACAGAGAGACCCGCAACCGCGAGGGTTTTCGCCGAATCACCCTCC 182783 | || | ||||| || |||||| || ||||| |||| ||| || || || || || Sbjct 7533 TTGTCTCTGCCAACAACTCCGAGACCAGCCACCGCCAGGGCTTTAGCGGAGTCTCCTTCG 7592 Query 182784 GTGACAATGAGAGTACACTTTCCAGATTGTGCCGTACCCGCCTTGTTCGCGTC 182836 |||| ||| || ||||| || | ||| || ||||| ||||| || || Sbjct 7593 GTGAGAATCAGGGTACAGTTCTTCGCGTGTTTGGTTCCCGCGTTGTTGGCATC 7645 >seq3003 Length=7408 Score = 84.2 bits (92), Expect = 3e-11 Identities = 159/230 (69%), Gaps = 3/230 (1%) Strand=Plus/Plus Query 9160 TCTATCAAGCCTCTTCCTCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAACGAGG 9219 |||| ||||| || | || ||| ||| || ||||| ||| |||| || | |||| Sbjct 5378 TCTACCAAGCGTCCACATCCGAGCTGTACGGCAAGGTCGTCGAGACACCGCAGAGCGAGA 5437 Query 9220 AGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTGGCTCG 9279 ||| ||||||||||| ||||| |||||| | | ||| | || | ||| ||| Sbjct 5438 CGACGCCCTTCTACCCGCGCTCTCCCTACGGCTGCGCCAAGCTCTACGCCTACTGGATCG 5497 Query 9280 TCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAACCATG 9339 | || ||||||||| | || || |||| |||||| || ||||| |||||||||| Sbjct 5498 TGGTCAACTACCGCGAGGCCTATGGCATGTTCGCGTGCAATGGGATCCTGTTCAACCATG 5557 Query 9340 AATCACCGAGACGAGGTGCAGAC-TTTGTGACCATGAAGATTACCGAGGG 9388 | || | || || | ||| || ||||| | |||||||| |||||| Sbjct 5558 AGAGTCCCCGCCG-GGGCCGGACATTCGTGACGAGGAAGATTA-CGAGGG 5605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627948047822400