Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001661215.1_202016-05-11]
10,694 sequences; 59,384,214 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq1000 131 2e-25
seq247 109 7e-19
seq925 107 2e-18
seq4743 91.5 2e-13
seq3003 84.2 3e-11
>seq1000
Length=18647
Score = 131 bits (144), Expect = 2e-25
Identities = 286/420 (68%), Gaps = 10/420 (2%)
Strand=Plus/Minus
Query 122671 TGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCC 122730
||||| ||||| || | || | |||||| ||||| | || |||||||| ||
Sbjct 12386 TGGAGGCCCTCGTCACAACTGATCAATTCATTGGAGAAAGTCAATCCAGGCATGAGCCCT 12327
Query 122731 CGCTTCTTCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789
|||||||| | |||| | ||||| ||| ||||| ||||| ||||| || || || |||||
Sbjct 12326 CGCTTCTTGATCCAAAAGATAGCTGCA-AATGAGCCGGAAAAGAAAATGCCTTCAACACA 12268
Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAACCATTTCATTGC 122849
| ||| || ||||| || || ||||| || || || | || |||| |||| ||
Sbjct 12267 GGAAAATGCCAAAAGACGCTCAGCGAACGACCGCGAGCGGTCGGTAATCCATGTCATCGC 12208
Query 122850 CCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC-TTCAAA--TAACTGCTT 122906
||||| |||||||||| | || || ||||||| ||| || || ||| ||| |||
Sbjct 12207 CCATTCTGCCTTCTTCTTCACGCAAGGCACAGTTTCGATAGCGTTGAAAAGTAAGGCCTT 12148
Query 122907 CTTTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTTCGCCATGAAC 122966
|| | | ||| | ||||| |||| || || || |||||||| ||||||
Sbjct 12147 CTCCTTGGG---ATCGGTGATGTAGGTGTCGATTAACAAGGAGTATGTTTCAGAATGAAC 12091
Query 122967 CATTTCATT-ATGGCATTGATATGCGTAGAATGAGCGCGCTTCGCTTATCTGAACCTCAT 123025
||||| | ||| | | || | || ||||| | | ||||| || | |||||| |
Sbjct 12090 ATTTTCAATCATGACCTGGA-AGGCATAGAAAGCCCAAGCTTCTCTCGGCGAAACCTCCT 12032
Query 123026 CCGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAGAATGCCA 123085
|| ||||| | | ||||| ||||||||||||||| | ||||| || ||||
Sbjct 12031 GAGCGAAATTTTCCAGCAAGTTCTCGTTGACAATTCCATCGGACGCCGCAAAAAAAGCCA 11972
>seq247
Length=45445
Score = 109 bits (120), Expect = 7e-19
Identities = 171/237 (72%), Gaps = 7/237 (3%)
Strand=Plus/Plus
Query 122658 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACC 122717
|||||| ||| || || || || |||| | || ||||| || || || || ||
Sbjct 37335 GGCAAAGTCCGTATGAAGTCCTTCGTCTCTGCTGATTAGTTCGTTCGAAAAAGTTAAGCC 37394
Query 122718 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGA 122776
|||||| || ||||| ||||| | |||| | | || ||| || || ||||||||||| |
Sbjct 37395 TGGCATAAG-CCCCGTTTCTTAATCCAAAAGACTGCTGCA-AACGATCCGGAGAAGAAAA 37452
Query 122777 TACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTG--CATC 122834
| || |||||||||||||| |||| | ||||||| ||| ||| | | || | |||
Sbjct 37453 TGCCTTCCACACACGCAAAGGCAACCAAACGTTCGG-GAAAGAG-GCGGATTGGATCATT 37510
Query 122835 AAACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 122891
|| |||||||| |||||| ||||| || | || ||||| || | ||| | ||| ||
Sbjct 37511 AATCCATTTCAATGCCCAGTTCGCTTTTTCCTGGATACAGGGAATAGTCTCGATAGC 37567
>seq925
Length=43645
Score = 107 bits (118), Expect = 2e-18
Identities = 112/147 (76%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729
||| ||||||||||||||| ||||| || |||| ||| |||| |||||||| | |||
Sbjct 13699 GTGAAGACCCTCATCTCGGCTGATAAGCTCGTTTGCGAACGATAGTCCTGGCATCAAACC 13758
Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789
|| |||||||||||| | || ||| |||||| ||||| ||||| || || || || ||
Sbjct 13759 CCTTTTCTTCAACCAAAAGATCGCGGCGAATGAGCCGGAAAAGAAAATCCCTTCTACGCA 13818
Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAA 122816
|| || || || | ||||| ||||
Sbjct 13819 TGCGAAAGCCAACAATCGTTCACCGAA 13845
>seq4743
Length=11411
Score = 91.5 bits (100), Expect = 2e-13
Identities = 200/293 (68%), Gaps = 10/293 (3%)
Strand=Plus/Plus
Query 182549 ATCTGTCATAATCATAAGACGACCATAGCG-AAGTTCAGAAACATCTTGGTAGTCTTTTC 182607
||| ||||||||||| || ||||| || || ||| ||| || || ||||| ||
Sbjct 7358 ATCAGTCATAATCATGAGTCGACCGTACCGCAAGCTCATGGTATTCGTG-TAGTCCTTGT 7416
Query 182608 CTTGTTGAAGACCAAGGATCTTCTTGAGATCATTGAACTCCTGGTT--TGATG-TAAGCT 182664
|| || || || | ||||||||||| || | || || | ||| | ||| | |||
Sbjct 7417 TATGCTGCAGCCCCATGATCTTCTTGATATTCTGGATTTCTTCGTTCTTCATGATTTGCT 7476
Query 182665 -GTGCCACCGAAGCGTCCCGAACATTCTTACATTTACCGCGAAGTGGGAACACACCGTAG 182723
||| | | || || |||||||| | || |||||||| |||||||||||| ||
Sbjct 7477 CGTGTCGC----GCCTCGCGAACATTGAGCAACTTGCCGCGAAGGGGGAACACACCGAAG 7532
Query 182724 TGATCACGACCAACGACAGAGAGACCCGCAACCGCGAGGGTTTTCGCCGAATCACCCTCC 182783
| || | ||||| || |||||| || ||||| |||| ||| || || || || ||
Sbjct 7533 TTGTCTCTGCCAACAACTCCGAGACCAGCCACCGCCAGGGCTTTAGCGGAGTCTCCTTCG 7592
Query 182784 GTGACAATGAGAGTACACTTTCCAGATTGTGCCGTACCCGCCTTGTTCGCGTC 182836
|||| ||| || ||||| || | ||| || ||||| ||||| || ||
Sbjct 7593 GTGAGAATCAGGGTACAGTTCTTCGCGTGTTTGGTTCCCGCGTTGTTGGCATC 7645
>seq3003
Length=7408
Score = 84.2 bits (92), Expect = 3e-11
Identities = 159/230 (69%), Gaps = 3/230 (1%)
Strand=Plus/Plus
Query 9160 TCTATCAAGCCTCTTCCTCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAACGAGG 9219
|||| ||||| || | || ||| ||| || ||||| ||| |||| || | ||||
Sbjct 5378 TCTACCAAGCGTCCACATCCGAGCTGTACGGCAAGGTCGTCGAGACACCGCAGAGCGAGA 5437
Query 9220 AGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTGGCTCG 9279
||| ||||||||||| ||||| |||||| | | ||| | || | ||| |||
Sbjct 5438 CGACGCCCTTCTACCCGCGCTCTCCCTACGGCTGCGCCAAGCTCTACGCCTACTGGATCG 5497
Query 9280 TCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAACCATG 9339
| || ||||||||| | || || |||| |||||| || ||||| ||||||||||
Sbjct 5498 TGGTCAACTACCGCGAGGCCTATGGCATGTTCGCGTGCAATGGGATCCTGTTCAACCATG 5557
Query 9340 AATCACCGAGACGAGGTGCAGAC-TTTGTGACCATGAAGATTACCGAGGG 9388
| || | || || | ||| || ||||| | |||||||| ||||||
Sbjct 5558 AGAGTCCCCGCCG-GGGCCGGACATTCGTGACGAGGAAGATTA-CGAGGG 5605
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 627948047822400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |