Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001661215.1_202016-05-11] 10,694 sequences; 59,384,214 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq1000 131 2e-25 seq247 104 3e-17 seq925 89.7 6e-13 seq6350 87.8 2e-12 seq4743 87.8 2e-12 seq4742 87.8 2e-12 >seq1000 Length=18647 Score = 131 bits (144), Expect = 2e-25 Identities = 286/420 (68%), Gaps = 10/420 (2%) Strand=Plus/Minus Query 130028 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCC 130087 ||||| |||||||||| ||| | |||||| ||||| || || |||||||| || Sbjct 12386 TGGAGGCCCTCGTCACAACTGATCAATTCATTGGAGAAAGTCAATCCAGGCATGAGCCCT 12327 Query 130088 CGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACAC 130147 |||||||| | ||| || || || ||||||||| || ||||| || || || ||||| Sbjct 12326 CGCTTCTTGATCCAAAAGATAGCTGCAAATGAGCCGGAAAAGAAAATGCCTTCAACACAG 12267 Query 130148 GCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGA-CTTTGTATCAAACCACTTCATCGC 130206 | || || || ||||||||||| || || || || | | | || ||| ||||||| Sbjct 12266 GAAAATGCCAAAAGACGCTCAGCGAACGACCGCGAGCGGTCGGT-AATCCATGTCATCGC 12208 Query 130207 CCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGT---TCCTT 130263 ||| | ||||| |||| | || || || || | ||| || | || ||| |||| Sbjct 12207 CCATTCTGCCTTCTTCTTCACGCAAGGCACAGTTTCGATAGCGTTGAAAAGTAAGGCCTT 12148 Query 130264 CTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCATGGAC 130323 || | || ||||| ||||||| | || || | || |||||||| ||| || Sbjct 12147 CTCCT-TG--GGATCGGTGATGTAGGTGTCGATTAACAAGGAGTATGTTTCAGAATGAAC 12091 Query 130324 CATTTC-ATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCAT 130382 |||| || ||| | ||| | || ||||||| | ||||| || | ||||| | Sbjct 12090 ATTTTCAATCATGAC-CTGGAAGGCATAGAAAGCCCAAGCTTCTCTCGGCGAAACCTCCT 12032 Query 130383 CTGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGCCA 130442 || ||||| | | ||||| ||||||||||||||| | |||||||| |||| Sbjct 12031 GAGCGAAATTTTCCAGCAAGTTCTCGTTGACAATTCCATCGGACGCCGCAAAAAAAGCCA 11972 >seq247 Length=45445 Score = 104 bits (114), Expect = 3e-17 Identities = 172/246 (70%), Gaps = 7/246 (3%) Strand=Plus/Plus Query 130015 GGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 130074 |||||| ||| || || || ||||| | | ||| ||||| ||||| || | || Sbjct 37335 GGCAAAGTCCGTATGAAGTCCTTCGTCTCTGCTGATTAGTTCGTTCGAAAAAGTTAAGCC 37394 Query 130075 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 130134 |||||| || ||||| ||||| | ||| || | || ||| || || |||||||| || Sbjct 37395 TGGCATAAG-CCCCGTTTCTTAATCCAAAAGACTGCTGCAAACGATCCGGAGAAGAAAAT 37453 Query 130135 CCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATC--- 130191 || ||||||||||| || |||| | ||| || | |||| |||| ||| ||| Sbjct 37454 GCCTTCCACACACGCAAAGGCAACCAAACGTTCGGGAAAGAGGCGG---ATTGGATCATT 37510 Query 130192 AAACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTC 130251 || ||| |||| ||||| | ||| |||| || |||||| || | |||| ||| || | Sbjct 37511 AATCCATTTCAATGCCCAGTTCGCTTTTTCCTGGATACAGGGAATAGTCTCGATAGCGTT 37570 Query 130252 AAAGAG 130257 ||||| Sbjct 37571 GAAGAG 37576 >seq925 Length=43645 Score = 89.7 bits (98), Expect = 6e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086 ||| |||||||| || ||| ||| || || || | ||| | || |||||||| | ||| Sbjct 13699 GTGAAGACCCTCATCTCGGCTGATAAGCTCGTTTGCGAACGATAGTCCTGGCATCAAACC 13758 Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146 || ||||||||||| || ||||| |||||||| || ||||| ||||| || || || Sbjct 13759 CCTTTTCTTCAACCAAAAGATCGCGGCGAATGAGCCGGAAAAGAAAATCCCTTCTACGCA 13818 Query 130147 CGCGAACGCAAA 130158 ||||| || || Sbjct 13819 TGCGAAAGCCAA 13830 >seq6350 Length=1587 Score = 87.8 bits (96), Expect = 2e-12 Identities = 273/413 (66%), Gaps = 15/413 (4%) Strand=Plus/Plus Query 14063 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 14122 |||||||| || |||||||| | ||| ||| || |||| ||| ||| ||||| | Sbjct 785 CGATCAAACCGCCCTGGGCGCAAGAGTGCGGGATCTAGGACGTCAGGGCGATTCGTTCCG 844 Query 14123 GCGATGACAACGA--TGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGAT 14180 || | ||||| | || | | | ||| ||||||||||||| || ||| || |||| Sbjct 845 GCCAACACAACAACATGTTCCTGT-GTTC-CAAAGCCATCCATTTCCACCAAAAGCTGAT 902 Query 14181 TGATGGTTTGTTCGCGTTCATCATTCGCAGGCA---TACCACCCGCACTGCGTTGCTTAC 14237 ||| ||| || | |||||||| || | | || ||| ||| ||| | Sbjct 903 TGAGGGTGGACTCCCTCTCATCATTGCCACCGAAGTTTCCCCCCTTTGCGCGAGACTTCC 962 Query 14238 CGACGGCGTCAATTTCATCGATGAAAACGATACATGG-TTGATTTTCACGGGCAACTTCA 14296 | | || || ||||| ||||| |||| ||| ||||| | |||| || | | || Sbjct 963 CAATAGCATCGATTTCGTCGATAAAAATGATGCATGGAGCGTGTTTCTTGGCCGA-AGCA 1021 Query 14297 AAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCG 14356 |||| ||| || ||||| | || || || ||||||||||| || || | | | | Sbjct 1022 AAGAGATCACGTACTCTTGAAGACCCAACTCCAACAAACATCTCGACGAACTCAGAGCCA 1081 Query 14357 GA-ACATTGG--ATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTC 14413 || || || | ||| || ||| | ||| || || | || |||||||| || Sbjct 1082 GATAC---GGACAGGAATGGCACGGAGGCTTCGCCAGCAGTTGCCTTCGCGAGGAGAGTT 1138 Query 14414 TTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACC 14466 || ||||| || ||| || | ||||| ||| ||||| |||||| ||||||| Sbjct 1139 TTACCCGTGCCCGGTGGTCCAGAGAGAATGGCGCCACGAGGGATCTTGGCACC 1191 >seq4743 Length=11411 Score = 87.8 bits (96), Expect = 2e-12 Identities = 177/258 (69%), Gaps = 6/258 (2%) Strand=Plus/Plus Query 179808 ATCCGTCATAATCATAAGCCGACCATAGCG-AAGCTC--GGAAACATCTTGATAATCCTT 179864 ||| ||||||||||| || ||||| || || |||||| || | || || || ||||| Sbjct 7358 ATCAGTCATAATCATGAGTCGACCGTACCGCAAGCTCATGGTAT--TCGTG-TAGTCCTT 7414 Query 179865 ACCTTGTTGAAGACCCAAGATCTTCTTGAGATCATTGAACTCTTGGTTTGATGTGAGTTG 179924 || || || |||| ||||||||||| || | || |||| ||| ||| ||| Sbjct 7415 GTTATGCTGCAGCCCCATGATCTTCTTGATATTCTGGATTTCTTCGTTCTTCATGATTTG 7474 Query 179925 CGCCACTGAAGCATCTCGGACATTTTTACACTTCCCACGGAGAGGGAACACACCGTAGTG 179984 | | | || || || ||||| |||| || || || |||||||||||| ||| Sbjct 7475 CTCGTGTCGCGCCTCGCGAACATTGAGCAACTTGCCGCGAAGGGGGAACACACCGAAGTT 7534 Query 179985 ATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGGAATCACCCTCCGT 180044 || | ||||| || ||||||||| || || |||| || ||||| || || || || Sbjct 7535 GTCTCTGCCAACAACTCCGAGACCAGCCACCGCCAGGGCTTTAGCGGAGTCTCCTTCGGT 7594 Query 180045 CACGATGAGCGTACACTT 180062 | || || ||||| || Sbjct 7595 GAGAATCAGGGTACAGTT 7612 >seq4742 Length=7625 Score = 87.8 bits (96), Expect = 2e-12 Identities = 208/310 (67%), Gaps = 6/310 (2%) Strand=Plus/Plus Query 179808 ATCCGTCATAATCATAAGCCGACCATAGCG-AAGCTC--GGAAACATCTTGATAATCCTT 179864 ||| ||||||||||| || || ||||| || |||||| || | || || || ||||| Sbjct 2290 ATCAGTCATAATCATGAGTCGCCCATACCGCAAGCTCATGGTAT--TCGTG-TAGTCCTT 2346 Query 179865 ACCTTGTTGAAGACCCAAGATCTTCTTGAGATCATTGAACTCTTGGTTTGATGTGAGTTG 179924 || || || |||| ||||||||||| || | || |||| ||| ||| ||| Sbjct 2347 GTTATGCTGCAGCCCCATGATCTTCTTGATATTCTGGATTTCTTCGTTCTTCATGATTTG 2406 Query 179925 CGCCACTGAAGCATCTCGGACATTTTTACACTTCCCACGGAGAGGGAACACACCGTAGTG 179984 | | | || || ||||| || |||| || || || |||||||||||| ||| Sbjct 2407 CTCATGTCGCGCCTCACGGACGTTAAGCAACTTGCCGCGAAGGGGGAACACACCGAAGTT 2466 Query 179985 ATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGGAATCACCCTCCGT 180044 || | ||||| || ||||||||| || || |||| || ||||| || || || || Sbjct 2467 GTCTCTGCCAACAACTCCGAGACCAGCCACCGCCAGGGCTTTGGCGGAGTCTCCTTCGGT 2526 Query 180045 CACGATGAGCGTACACTTTCCAGATTGTGCCGTCCCTGCCTTGTTCGCGTCGTCCAACTT 180104 | || || || || || | ||| || || || ||||| || ||| || ||| Sbjct 2527 GAGAATCAGGGTGCAGTTCTTCGCGTGTTTGGTTCCCGCATTGTTGGCATCGGACAGCTT 2586 Query 180105 GGGAATACCA 180114 || | |||| Sbjct 2587 GGTCAGACCA 2596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618352530674640