Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001661215.1_202016-05-11] 10,694 sequences; 59,384,214 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq1000 118 1e-21 seq4743 107 2e-18 seq179 100 3e-16 >seq1000 Length=18647 Score = 118 bits (130), Expect = 1e-21 Identities = 163/223 (73%), Gaps = 4/223 (2%) Strand=Plus/Plus Query 94723 GCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT 94782 || ||| |||| || || || | | ||||| || || ||||| |||| ||| || | Sbjct 12166 GCTATCGAAACTGTGCCTTGCGTGAAGAAGAAGGCAGAATGGGCGATGACATGGATT-AC 12224 Query 94783 ACAAAG-TCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTT 94841 | | ||||| || || |||||||| || || |||||| | |||||||| || || || Sbjct 12225 CGACCGCTCGCGGTCGTTCGCTGAGCGTCTTTTGGCATTTTCCTGTGTTGAAGGCATTTT 12284 Query 94842 CTTCTCTGGTTCCTTCTGC-GCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTC 94900 ||| || || || || ||| ||||| | |||| ||||||||||||| |||||||| || Sbjct 12285 CTTTTCCGGCTCATT-TGCAGCTATCTTTTGGATCAAGAAGCGAGGGCTCATGCCTGGAT 12343 Query 94901 TCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCA 94943 | |||||||| || | ||| | |||||||||| ||||| Sbjct 12344 TGACTTTCTCCAATGAATTGATCAGTTGTGACGAGGGCCTCCA 12386 >seq4743 Length=11411 Score = 107 bits (118), Expect = 2e-18 Identities = 206/295 (70%), Gaps = 14/295 (5%) Strand=Plus/Plus Query 169201 ATCCGTCATGATCATGAGACGACCATACCG-AAGCTC--GGAAACATCTTGATAGTCCTT 169257 ||| ||||| |||||||| ||||| ||||| |||||| || | || || |||||||| Sbjct 7358 ATCAGTCATAATCATGAGTCGACCGTACCGCAAGCTCATGGTAT--TCGTG-TAGTCCTT 7414 Query 169258 ACCCTGTTGAAGACCCAAGATCTTCTTGAGATCGTTGAACTCTTGGTT--TGATG-TGAG 169314 || || || |||| ||||||||||| || | || |||| ||| | ||| | | Sbjct 7415 GTTATGCTGCAGCCCCATGATCTTCTTGATATTCTGGATTTCTTCGTTCTTCATGATTTG 7474 Query 169315 CT-GTGTGACAGAGGCATCGCGAACATTCTTACACTTCCCACGAAGAGGGAAGACACCGT 169373 || |||| | || ||||||||||| |||| || ||||| ||||| |||||| Sbjct 7475 CTCGTGTCGC----GCCTCGCGAACATTGAGCAACTTGCCGCGAAGGGGGAACACACCGA 7530 Query 169374 AGTGATCACGACCAACGACGGAGAGACCCGCGACTGCGAGAGTCTTCGCCGAGTCACCCT 169433 ||| || | ||||| || |||||| || || || || | || || ||||| || | Sbjct 7531 AGTTGTCTCTGCCAACAACTCCGAGACCAGCCACCGCCAGGGCTTTAGCGGAGTCTCCTT 7590 Query 169434 CGGTGACGATGAGCGTACATTTTCCAGATTGTGCCGTACCCGCCTTGTTCGCATC 169488 |||||| || || ||||| || | ||| || ||||| ||||| ||||| Sbjct 7591 CGGTGAGAATCAGGGTACAGTTCTTCGCGTGTTTGGTTCCCGCGTTGTTGGCATC 7645 >seq179 Length=47363 Score = 100 bits (110), Expect = 3e-16 Identities = 158/218 (72%), Gaps = 10/218 (5%) Strand=Plus/Plus Query 94711 CAGCTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAG-CGGATTGGGCTAT 94769 || ||||| || || | ||||| | ||| || |||||||||| |||||||||| | Sbjct 9114 CATCTCTTCGATGCGCTTGAAACAATGGAGTGCAT-CAAAAGAAAGGCGGATTGGGCATT 9172 Query 94770 GAAGTGGTTTGATACAAAGTC-GCGTT--CCTTTGCTGAGCGAC-TCTTCGCATTTGCGT 94825 ||| ||| | || | | || ||| | |||||| ||| || || | || ||||| | Sbjct 9173 GAAATGGATCGA---AGATTCCGCGGTTGCCTTTGGA-AGCCACCTCGTAGCCTTTGCCT 9228 Query 94826 GTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAG 94885 | || || || ||||| || |||||||||||| || |||| |||||| ||||| || | Sbjct 9229 GCGTGGAAGGCATCTTTTTTTCTGGTTCCTTCGCGGCCATTTTTTGGCTGAAGAAACGTG 9288 Query 94886 GTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATC 94923 || | |||||||| | |||||||| ||||||||| Sbjct 9289 GTGTGATGCCAGGATTGACTTTCTCCAATGAGCTTATC 9326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583182832612560