Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001661215.1_202016-05-11] 10,694 sequences; 59,384,214 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq32 107 2e-18 seq434 105 7e-18 seq179 91.5 2e-13 seq1000 87.8 2e-12 >seq32 Length=1481398 Score = 107 bits (118), Expect = 2e-18 Identities = 293/442 (66%), Gaps = 9/442 (2%) Strand=Plus/Minus Query 59677 ACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTG 59736 || |||||| ||||||||| ||||| || |||||||| || ||||| |||| Sbjct 1082506 ACAACGAGCGCCATTTCATCTCCCATGTCCTCGCTTTCTTCGCAGCCTCGGATGGTATTG 1082447 Query 59737 TGATGGAAAATATAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGT 59796 | | || || | | | | ||||||||| || ||||| |||||||||| || | | Sbjct 1082446 TCAACGAGAACCTTGTCGAGCGCTTTTCCAACGAGGTCCAAGTTGCCGAGGCTCGATGTT 1082387 Query 59797 TCTACGCGTATCAGTCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCG 59856 |||| | | || | | ||| || ||||| |||||||| ||||| | |||| Sbjct 1082386 TCTATGGCTTCCAAATCATGATGGAGAACATTCACTCAGAGACGTATTCGCTTCTCATCG 1082327 Query 59857 ATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGT--CTGTTCCGTGCCATAGAGACGTC 59914 | | | ||||||| | | || | || || || ||| ||| | ||||| Sbjct 1082326 ACACCTATATCAAGGACGCTGCCGA--ACGCGAGTACCTTTTCGACGCCGTGGAGACCAT 1082269 Query 59915 CCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGATGA--GTCCTGGAG-CATC 59971 || || || | || ||||| ||||| || | ||||| | || | || | Sbjct 1082268 TCCGTGTGTCAAGCGCAAGGCAGACTGGGCACTGAACTGGATCTCCGACCGACGGTCAAC 1082209 Query 59972 ATTTGCACAACGTCTCATAGCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGT 60030 |||| |||| | | || ||||| ||| || ||||| ||||||||||| ||||| | Sbjct 1082208 TTTTGGTGAACGCTTGGTGGCGTTTGC-TGCTGTTGAAGGCATCTTCTTCTCGGGCTCTT 1082150 Query 60031 TCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACG 60090 || | || |||||| | || ||||| ||| | ||||| ||||||| ||| ||||| | Sbjct 1082149 TCGCGTCCATCTTCTGGATGAAGAAGCGAGGCTTGATGCCTGGCCTGACTTTTTCCAATG 1082090 Query 60091 AGCTGATTTCCCGGGACGAGGG 60112 |||| ||| ||| ||||| || Sbjct 1082089 AGCTCATTAGCCGCGACGAAGG 1082068 Score = 107 bits (118), Expect = 2e-18 Identities = 345/527 (65%), Gaps = 10/527 (2%) Strand=Plus/Plus Query 59595 TATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACCTG 59654 || |||||||| | ||||||||| | | || || ||||||| || ||| | Sbjct 1083724 TACAAGAAAGCTCAAGCCTCATTCTGGACAGCTGAAGAACTTGACCTTTCCCATGACTTC 1083783 Query 59655 AAGGATTGGGAC---AAGCTCAATTACGACGAGCAGCATTTCATCAAGATGGTCCTGGCC 59711 ||| ||| || || ||||| | || |||| | |||| || | || || || Sbjct 1083784 GTGGACTGGAACTTCAATCTCAACCATGATGAGCGGTATTTTATATCGCATGTTCTTGCT 1083843 Query 59712 TTCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATATAGACATGAACTTTTCCAAGGAT 59771 ||||| ||||| ||||| ||||| | || || | | | | |||| || Sbjct 1083844 TTCTTTGCGGCCTCAGATGGCATTGTAAACGAGAACCTCGTCGAAAGGTTTTGTGGTGAA 1083903 Query 59772 GTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAGTCGTTCAACGAGTCTATCCAC 59831 || ||| | ||||||| || || ||||| | | ||| | | ||| |||||| Sbjct 1083904 GTGCAGGTACCCGAGGCGCGTTCCTTCTATGGCTTTCAAATCATGATGGAGAATATCCAT 1083963 Query 59832 TCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGT 59891 ||||| ||||| ||| | | |||||| | ||||||||||| | ||| ||| Sbjct 1083964 TCCGAAACGTATTCGTTGCTTATCGATGGCTACATCAAGGATCCGCAGGAGCGGGCCCAC 1084023 Query 59892 CTGTTCCGTGCCATAGAGA-CGTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCA 59950 || ||| |||||||| | | | || ||| | || | ||||| || ||||| | | Sbjct 1084024 CTTTTCGACGCCATAGACACCATTCCTTGCA-TCAAGCGCAAAGCTGATTGGGCTCTAAA 1084082 Query 59951 GTGGA--TGAGTCCTGGA-GCATCATTTGCACAACGTCTCATAGCTTTTGCATGC-GTGG 60006 |||| | || | | || | || || ||||||| | || ||||| ||| || | Sbjct 1084083 ATGGATTTCAGACAAACATTCAACCTTCGCGGAACGTCTAGTTGCCTTTGC-TGCTGTCG 1084141 Query 60007 AAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCA 60066 |||| || ||||| ||||| ||||| | || |||||| |||| || ||||| || | Sbjct 1084142 AAGGGATATTCTTTTCTGGGTCGTTTGCCTCAATATTCTGGATCAAGAAACGTGGTCTTA 1084201 Query 60067 TGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGC 60113 |||| ||||||| || ||||| ||||| ||| || ||||||||| Sbjct 1084202 TGCCTGGCCTGACATTTTCCAATGAGCTTATTAGTCGAGACGAGGGC 1084248 >seq434 Length=244965 Score = 105 bits (116), Expect = 7e-18 Identities = 250/374 (67%), Gaps = 8/374 (2%) Strand=Plus/Minus Query 19844 AAGTCAAATCAGAAGAACATCGGCGCGATCAAGTCGTCCAACCTGTGTACTGAAATCATG 19903 || || |||||||||||| | || | ||||| || || || || || || |||||||| Sbjct 86977 AAATCGAATCAGAAGAACCTTGGTACCATCAAATCCTCGAATCTCTGCACAGAAATCATC 86918 Query 19904 GAGGTTTCCAAGCCGGACGAGACTGCCGTGTGTAATCTGGCGTCCCTGTGCCTGCCGACT 19963 || |||| || ||||| || ||||| ||||| || || || ||| || || || Sbjct 86917 GAATATTCCTCCCCTGACGAAACCGCCGTTTGTAACCTTGCCTCTCTGGCTCTCCCCACA 86858 Query 19964 TTCGTCAAGGCCTCCTCCTTCGACTTTGCCAAATTGTACGAGGTGACCCGGGTCGTCACG 20023 ||| ||| | | ||| ||||| || | |||| || ||| || || | Sbjct 86857 TTCATCACGAACGGAAAATTCAACTTTAAGAAGCTCCACGATGTCACCAAAGTTGTTGCC 86798 Query 20024 CGTAATCTGAATCGCGTCATCGATCGGAACTTTTACCCGACCGAGGCGGCGCGCAAGTCG 20083 ||||||||||| |||||||| |||| || || || ||| || ||| Sbjct 86797 TTCAATCTGAATCGAGTCATCGACGTCAACTACTATCCTGTTCCGGAGGCTCGGCGGTCA 86738 Query 20084 AATATGCGCCACCGGCCGATCGCGATCGGCGTCCAGGGCCTGGCCGACGTTTTCATGATG 20143 || |||||||| || || |||| ||||| || ||||| |||||||||| |||||| | Sbjct 86737 AACATGCGCCATCGACCCATCGGAATCGGTGTGCAGGGTCTGGCCGACGCCTTCATG--G 86680 Query 20144 CTCGGCCTCT--CATTCGACGATCCCAAG--GCGCGCGAGCTCAACAAGGGCATCTTCGA 20199 ||| || | | |||| ||| || | || || |||||||||| |||||||| Sbjct 86679 CTCTGCATATGCCATTTGAC--TCACCAGCAGCCAAGGAGCTCAACATTCAAATCTTCGA 86622 Query 20200 GGCCGTGTACCACG 20213 | | | || |||| Sbjct 86621 GACGATCTATCACG 86608 Score = 104 bits (114), Expect = 3e-17 Identities = 200/293 (68%), Gaps = 4/293 (1%) Strand=Plus/Plus Query 78864 CATGAAGACATCGGCCAGGCCCTGGACGCCGATAGCGATCGGTCGGTGGCGCATGTTGCT 78923 ||||||| | |||||||| ||||| || ||||| |||| ||||| ||||||||||| Sbjct 86681 CATGAAGGCGTCGGCCAGACCCTGCACACCGATTCCGATGGGTCGATGGCGCATGTTTGA 86740 Query 78924 CTTTCGGGCCGCCTCGGTCGGGTAAAAGTTCCGATCGATGACGCGGTTCAGGTTACGCGT 78983 | || ||| || || || |||| |||||||| || ||||| || | Sbjct 86741 CCGCCGAGCCTCCGGAACAGGATAGTAGTTGACGTCGATGACTCGATTCAGATTGAAGGC 86800 Query 78984 GACGACCCGAGTCACCTCGTACAATTTGGCGAAATCAAAATGATTTCCTT--TGATGAAA 79041 || || || || |||| | || || | || | || | || ||||||| Sbjct 86801 AACAACTTTGGTGACATCGTGGAGCTTCTTAAAGTTGAATT--TTCCGTTCGTGATGAAT 86858 Query 79042 GTCGGTAGGCACAGCGATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCG 79101 || || || ||| || || ||||| || ||||| || ||||| ||| ||| ||| Sbjct 86859 GTGGGGAGAGCCAGAGAGGCAAGGTTACAAACGGCGGTTTCGTCAGGGGAGGAATATTCG 86918 Query 79102 ATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTT 79154 |||||||||||||| | ||| || || |||||||| || | ||||||||| || Sbjct 86919 ATGATTTCTGTGCAGAGATTCGAGGATTTGATGGTACCAAGGTTCTTCTGATT 86971 Score = 82.4 bits (90), Expect = 8e-11 Identities = 129/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 78199 TAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATACTCGACAGCTTG 78258 ||||||||||||||||| | ||||||||||| ||||| | |||||| || | || || Sbjct 85952 TAGTACATGCCCGTCTTCAAGCCCTTCTTCCACCCGTAAAAGTGCATGCTGGTCAACTGT 86011 Query 78259 GCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCGATGTACGCACCG 78318 | ||| |||| || | | ||||| | ||| |||| ||| |||| ||| Sbjct 86012 CCGAGAGTCGGTGCCTGGAGGTGAATGTTCAAGCTCTGACTCTGGCAAATGAACGCGCCG 86071 Query 78319 CGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCAGATGGTCCGGTAAATG 78378 || ||||| || | |||||| || ||| || |||||||||| ||| ||| || Sbjct 86072 CGATCGGCAGCGAGGTCGATCACTTTCTTCTGACTGATCTCCCAGACGGTTTTGTAGATC 86131 Query 78379 GCCTT 78383 ||||| Sbjct 86132 GCCTT 86136 >seq179 Length=47363 Score = 91.5 bits (100), Expect = 2e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 59985 CTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTC 60044 ||| |||| ||||| ||||||||||| ||||| || ||||| || ||| || ||||| Sbjct 9213 CTCGTAGCCTTTGCCTGCGTGGAAGGCATCTTTTTTTCTGGTTCCTTCGCGGCCATTTTT 9272 Query 60045 TGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGAT 60097 ||||| || || ||||| | ||||| || ||| ||||||||| ||||| || Sbjct 9273 TGGCTGAAGAAACGTGGTGTGATGCCAGGATTGACTTTCTCCAATGAGCTTAT 9325 >seq1000 Length=18647 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/192 (71%), Gaps = 3/192 (2%) Strand=Plus/Plus Query 59931 AAAGCAGAATGGGCCATGCAGTGGATGA--GTCCTGGAGCA-TCATTTGCACAACGTCTC 59987 || ||||||||||| ||| ||||| | | || || || || || | ||||| Sbjct 12196 AAGGCAGAATGGGCGATGACATGGATTACCGACCGCTCGCGGTCGTTCGCTGAGCGTCTT 12255 Query 59988 ATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGG 60047 | || ||| | || || ||||| || ||||| || ||||| || ||||| || ||| Sbjct 12256 TTGGCATTTTCCTGTGTTGAAGGCATTTTCTTTTCCGGCTCATTTGCAGCTATCTTTTGG 12315 Query 60048 CTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGAC 60107 |||| ||||| || |||||||| || ||| ||||||||| || |||| | ||| Sbjct 12316 ATCAAGAAGCGAGGGCTCATGCCTGGATTGACTTTCTCCAATGAATTGATCAGTTGTGAC 12375 Query 60108 GAGGGCCTCCAT 60119 |||||||||||| Sbjct 12376 GAGGGCCTCCAT 12387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548451475947360