Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001661215.1_202016-05-11] 10,694 sequences; 59,384,214 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq32 118 1e-21 seq1000 102 9e-17 seq247 98.7 1e-15 seq179 98.7 1e-15 seq434 89.7 6e-13 seq925 82.4 8e-11 >seq32 Length=1481398 Score = 118 bits (130), Expect = 1e-21 Identities = 294/442 (67%), Gaps = 7/442 (2%) Strand=Plus/Plus Query 74769 CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTC 74828 ||||| || | ||| || | ||||| ||||| | ||||||||||| | || |||||| Sbjct 1082068 CCTTCGTCGCGGCTAATGAGCTCATTGGAAAAAGTCAGGCCAGGCATCAAGCCTCGCTTC 1082127 Query 74829 TTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAG 74888 |||| ||| ||||||| ||| || || ||||||||||||||| ||| ||||| Sbjct 1082128 TTCATCCAGAAGATGGACGCGAAAGAGCCCGAGAAGAAGATGCCTTCAACAGCAGCAAAC 1082187 Query 74889 GCGACAAGGCGTTGCGCGAACGGTG--CATCGG-AAGTCATCCAAGTCTGAGCCCATTCA 74945 || || | ||||| | || | || | |||| | ||||| || | ||||| || Sbjct 1082188 GCCACCAAGCGTTCACCAAAAGTTGACCGTCGGTCGGAGATCCAGTTCAGTGCCCAGTCT 1082247 Query 74946 GCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGGAAGAGG--CTTGCCTTCTCTT 75003 || || || ||||| || | || || | || | ||| ||| || || | || Sbjct 1082248 GCCTTGCGCTTGACACACGGAATGGTCTCCACGGCGTCGAAAAGGTACTCGCGT--TCGG 1082305 Query 75004 CGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGT 75063 | | ||||||| |||| || | ||| || |||||||| || ||||| ||| Sbjct 1082306 CAGCGTCCTTGATATAGGTGTCGATGAGAAGCGAATACGTCTCTGAGTGAATGTTCTCCA 1082365 Query 75064 TGAACGACTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTTTGAAAAAT 75123 | | ||| | | |||||| | || ||||| |||| || || || || ||||| Sbjct 1082366 TCATGATTTGGAAGCCATAGAAACATCGAGCCTCGGCAACTTGGACCTCGTTGGAAAAGC 1082425 Query 75124 TCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTT 75183 | | | | ||||| |||| || || |||||||| ||||| ||||| || || Sbjct 1082426 GCTCGACAAGGTTCTCGTTGACAATACCATCCGAGGCTGCGAAGAAAGCGAGGACATGGG 1082485 Query 75184 TGATAAAGTGGCGCTCATCGTC 75205 ||| || |||||||| | ||| Sbjct 1082486 AGATGAAATGGCGCTCGTTGTC 1082507 Score = 118 bits (130), Expect = 1e-21 Identities = 286/425 (67%), Gaps = 15/425 (4%) Strand=Plus/Minus Query 74763 TGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCA 74822 ||| |||| || |||| || || | ||||| ||||| | |||||||||||||| ||| Sbjct 1084253 TGCAAGCCCTCGTCTCGACTAATAAGCTCATTGGAAAATGTCAGGCCAGGCATAAGACCA 1084194 Query 74823 CGCTTCTTCAACCAAAAGAT---GGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACA 74879 || ||||| | ||| || || |||| || || ||| ||||| || ||||||||| Sbjct 1084193 CGTTTCTTGATCCAGAATATTGAGGCA---AACGACCCAGAAAAGAATATCCCTTCGACA 1084137 Query 74880 CACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCGGAAGTC----ATCCAAGTCTG 74935 |||||||| || || |||| |||||| | || || | ||| ||||| | | Sbjct 1084136 GCAGCAAAGGCAACTAGACGTTCCGCGAAGGTTGAAT-GTTTGTCTGAAATCCATTTTAG 1084078 Query 74936 AGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGGAAGAGGCTTGC 74995 |||||| |||||||| || |||| ||| | || || || || | ||| ||| || Sbjct 1084077 AGCCCAATCAGCTTTGCGCTTGATGCAAGGAATGGTGTCTATGGCGTCGAAAAGGTGGGC 1084018 Query 74996 CTTCTCTTCGGGATCCTTGACG-AGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAA 75054 | ||| | |||||||||| | ||| || || | | || ||||| || ||||| | Sbjct 1084017 CCGCTCCTGCGGATCCTTGATGTAGC-CATCGATAAGCAACGAATACGTTTCGGAATGGA 1083959 Query 75055 TCGACTCGTTGAACGACTGGTACG-CGTAGAAAGACCGCGCCTCTGCAATCTGTACATCC 75113 | ||| | | || | | | | | ||||| || |||||||| | | ||| || || Sbjct 1083958 TATTCTCCAT-CATGATTTGAAAGCCATAGAAGGAACGCGCCTCGGGTACCTGCACTTCA 1083900 Query 75114 TTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCC 75173 |||| | | ||| ||||| | || ||||| || ||||| || || ||||| Sbjct 1083899 CCACAAAACCTTTCGACGAGGTTCTCGTTTACAATGCCATCTGAGGCCGCAAAGAAAGCA 1083840 Query 75174 AGTAC 75178 || || Sbjct 1083839 AGAAC 1083835 >seq1000 Length=18647 Score = 102 bits (112), Expect = 9e-17 Identities = 199/290 (69%), Gaps = 3/290 (1%) Strand=Plus/Minus Query 74768 GCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTT 74827 ||| || || | || ||||||||||| || || | | |||||||| || || ||||| Sbjct 12381 GCCCTCGTCACAACTGATCAATTCATTGGAGAAAGTCAATCCAGGCATGAGCCCTCGCTT 12322 Query 74828 CTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAA 74887 ||| | ||||||||| || || || || ||||| |||||||| ||||| | ||| Sbjct 12321 CTTGATCCAAAAGATAGCTGCAAATGAGCCGGAAAAGAAAATGCCTTCAACACAGGAAAA 12262 Query 74888 GGCGACAAGGCGTTGCGCGAACG-GTGC-ATCGG-AAGTCATCCAAGTCTGAGCCCATTC 74944 || | ||| || | ||||||| || | ||| || ||||| ||| |||||||| Sbjct 12261 TGCCAAAAGACGCTCAGCGAACGACCGCGAGCGGTCGGTAATCCATGTCATCGCCCATTC 12202 Query 74945 AGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTTC 75004 || || || || ||| ||||| ||||| || | ||| || |||||||| | Sbjct 12201 TGCCTTCTTCTTCACGCAAGGCACAGTTTCGATAGCGTTGAAAAGTAAGGCCTTCTCCTT 12142 Query 75005 GGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAA 75054 |||||| ||| | |||| || | | ||||| || || ||||||| Sbjct 12141 GGGATCGGTGATGTAGGTGTCGATTAACAAGGAGTATGTTTCAGAATGAA 12092 >seq247 Length=45445 Score = 98.7 bits (108), Expect = 1e-15 Identities = 173/245 (71%), Gaps = 8/245 (3%) Strand=Plus/Plus Query 74750 GGCAAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCC 74809 |||||| ||| ||| ||||| |||||||| || | ||| |||||||| | | ||| Sbjct 37335 GGCAAAGTCCGTATGAAGTCCTTCGTCTCTGCTGATTAGTTCGTTCGAAAAAGTTAAGCC 37394 Query 74810 AGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGAT 74869 |||||||| || || ||||| | |||||||| || || || || |||||| || Sbjct 37395 TGGCATAAGCCC-CGTTTCTTAATCCAAAAGACTGCTGCAAACGATCCGGAGAAGAAAAT 37453 Query 74870 GCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAA--CGGTGCATCGGA--AGTCA 74925 |||||| |||||||||||||| || | |||| || ||| || | || ||| | | | Sbjct 37454 GCCTTCCACACACGCAAAGGCAACCAAACGTT-CGGGAAAGAGGCGGATTGGATCATTAA 37512 Query 74926 TCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGG-ACAGTATCGATCGCTTGG 74984 |||| || ||||| | |||||| | || ||||| | ||| ||||| || | | Sbjct 37513 TCCATTTCAATGCCCAGTTCGCTTTTTCCTGGA-TACAGGGAATAGTCTCGATAGCGTTG 37571 Query 74985 AAGAG 74989 ||||| Sbjct 37572 AAGAG 37576 >seq179 Length=47363 Score = 98.7 bits (108), Expect = 1e-15 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 74769 CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTC 74828 |||||||||||||| || | ||||| || || | | || ||||| | ||||| ||| Sbjct 9340 CCTTCATCTCTGCTGATAAGCTCATTGGAGAAAGTCAATCCTGGCATCACACCACGTTTC 9281 Query 74829 TTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAG 74888 |||| |||||| ||||| |||||||||| || ||||||||||| || || |||||| Sbjct 9280 TTCAGCCAAAAAATGGCCGCGAAGGAACCAGAAAAAAAGATGCCTTCCACGCAGGCAAAG 9221 Query 74889 GCGACAAGG 74897 || || ||| Sbjct 9220 GCTACGAGG 9212 >seq434 Length=244965 Score = 89.7 bits (98), Expect = 6e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 55728 TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTG 55787 |||||| ||| ||| || || |||||||| ||||||| |||| ||| | || Sbjct 86138 TCAAGGCGATCTACAAAACCGTCTGGGAGATCAGTCAGAAGAAAGTGATCGACCTCGCTG 86079 Query 55788 CTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTT 55847 | ||||| || |||| ||| |||| ||| ||||||| | | || || Sbjct 86078 CCGATCGCGGCGCGTTCATTTGCCAGAGTCAGAGCTTGAACATTCACCTCCAGGCACCGA 86019 Query 55848 CACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTA 55907 | || | |||||| | |||||||||||||||||||||||||| | |||||||| | Sbjct 86018 CTCTCGGACAGTTGACCAGCATGCACTTTTACGGGTGGAAGAAGGGCTTGAAGACGGGCA 85959 Query 55908 TGTACTATCTGCGGACC 55924 ||||||| || |||||| Sbjct 85958 TGTACTACCTTCGGACC 85942 >seq925 Length=43645 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/225 (69%), Gaps = 5/225 (2%) Strand=Plus/Plus Query 74769 CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTC 74828 || ||||||| ||| || | || || | ||||| || || ||||| | || | ||| Sbjct 13706 CCCTCATCTCGGCTGATAAGCTCGTTTGCGAACGATAGTCCTGGCATCAAACCCCTTTTC 13765 Query 74829 TTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGC-AAA 74887 |||||||||||||| || ||| || || ||||| || ||||| || || || ||| Sbjct 13766 TTCAACCAAAAGATCGCGGCGAATGAGCCGGAAAAGAAAATCCCTTCTACGCATGCGAAA 13825 Query 74888 GGCGACAAGGCGTTGCGCGAACG---GTGCATCGGAAGTCATCCAAGTCTGAGCCCATTC 74944 | | |||| |||| |||||| | | ||| ||| ||||||||| |||||| || Sbjct 13826 GCCAACAA-TCGTTCACCGAACGTTCTTTCCTCGTCAGTTATCCAAGTCAAAGCCCAATC 13884 Query 74945 AGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGGAAGAG 74989 |||||| || || ||| | || || ||||| | ||| || Sbjct 13885 TGCTTTTTTCTTCACGCAAGGAATTGTTTCCATCGCATTGAATAG 13929 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547142850901200