Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001661215.1_202016-05-11] 10,694 sequences; 59,384,214 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq9840 158 1e-33 seq2021 127 2e-24 seq9205 118 1e-21 seq106 102 9e-17 seq1421 98.7 1e-15 seq9206 96.9 4e-15 seq1000 96.9 4e-15 seq1422 95.1 1e-14 seq9278 93.3 5e-14 seq451 89.7 6e-13 seq925 84.2 2e-11 >seq9840 Length=425 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| ||||| | ||||||||||| || || || || || ||||| Sbjct 34 ATGCAGATTTTTGTGAAGACATTGACCGGCAAGACGATCACGCTGGAAGTGGAGTCTTCC 93 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||||| || |||||||| |||||||| |||||||| || ||| Sbjct 94 GACACCATCGACAATGTCAAGGCAAAGATTCAGGATAAGGAGGGCATTCCTCCCGATCAG 153 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| |||||||| || || |||||||||||||| | ||| || || | || || || Sbjct 154 CAGCGCCTAATTTTCGCCGGCAAGCAACTCGAGGACGGTCGAACTCTTTCTGATTACAAC 213 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || ||||| || | || || || ||||| Sbjct 214 ATCCAGAAGGAGTCAACGCTCCATCTCGTTCTTCGCCTCCGTGGTGG 260 >seq2021 Length=7336 Score = 127 bits (140), Expect = 2e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || ||||| | || || ||||| || || | || || ||||| Sbjct 58 ATGCAAATCTTCGTGAAGACTTTGACGGGAAAGACGATCACGTTGGAAGTCGAGTCTTCG 117 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| ||| ||||||| || |||||||| |||||||| |||||||| |||||| Sbjct 118 GATACGATTGACAATGTGAAGGCGAAGATTCAGGATAAGGAGGGCATTCCTCCTGACCAG 177 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || ||||| || ||||| | ||||| | ||||| | | || || ||| Sbjct 178 CAGCGCCTCATCTTTGCCGGGAAGCAGTTGGAGGACGGGCGTACTTTGTCGGATTACAAT 237 Query 27586 GTCCAAAAGGAATCCACTCTTCA 27608 | || ||||| ||| ||||| Sbjct 238 ATTCAGAAGGAGAGCACCCTTCA 260 >seq9205 Length=338 Score = 118 bits (130), Expect = 1e-21 Identities = 113/145 (78%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || ||||||||||| || || ||||| ||||| |||||||| || ||| Sbjct 145 ATGCAAATTTTCGTCAAGACGCTCACGGGAAAGACCATTACCCTTGAGGTCGAATCATCG 86 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| | ||||| || ||||||||||||||||| ||| | || | ||| Sbjct 85 GACACTATCGATAATGTCAAGGCGAAGATTCAGGACAAGGAGGGTATTGCCCCTGCCCAA 26 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGC 27550 ||||| | ||||||||||| |||| Sbjct 25 CAGCGCTTGATTTTTGCTGGGAAGC 1 Score = 93.3 bits (102), Expect = 5e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 27496 CAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTC 27555 |||||||||||||| ||||| || |||||||||||| | || || || || ||||| ||| Sbjct 338 CAGGACAAGGAGGGTATTCCCCCGGACCAGCAGCGTTTGATCTTCGCGGGCAAGCAGCTC 279 Query 27556 GAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCT 27611 ||||| | || || || | || ||||| | || ||||| || ||||| ||||| Sbjct 278 GAGGACGGCCGCACTCTTTCCGATTATAACATTCAGAAGGAGTCTACTCTGCATCT 223 >seq106 Length=225739 Score = 102 bits (112), Expect = 9e-17 Identities = 98/123 (80%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 27511 ATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACC 27570 || ||||| |||||||||||||| || || || || ||||| || ||||||| ||| ||| Sbjct 79797 ATCCCTCCCGACCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGTCGCACC 79738 Query 27571 CT-AGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGG 27629 || ||| ||||| || |||||||||| |||||||| || | ||| | ||||| || || Sbjct 79737 CTCAGC-GACTACAACATCCAAAAGGAGTCCACTCTCCACTTGGTCCTTCGTCTGCGTGG 79679 Query 27630 TGG 27632 ||| Sbjct 79678 TGG 79676 >seq1421 Length=2902 Score = 98.7 bits (108), Expect = 1e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 27511 ATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACC 27570 || || || ||||| |||||||| || ||||| || ||||| ||||| |||| |||||| Sbjct 2724 ATCCCGCCCGACCAACAGCGTCTGATCTTTGCCGGGAAGCAGCTCGAAGATGGGCGTACC 2783 Query 27571 CTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGT 27630 || ||||||| || | || || || ||||| |||||||| || | ||||||||||| Sbjct 2784 CTCTCAGACTACAACATTCAGAAAGAGTCCACCCTTCATCTTGTGCTCCGTCTTCGCGGC 2843 Query 27631 GG 27632 || Sbjct 2844 GG 2845 >seq9206 Length=299 Score = 96.9 bits (106), Expect = 4e-15 Identities = 125/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 27439 ACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAG 27498 || || || || || || ||||| |||| ||||| || | ||||| || || ||| Sbjct 1 ACCATCACCCTGGAAGTCGAGTCCTCGGATACCATTGACAACGTCAAGGCCAAGATCCAG 60 Query 27499 GACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAG 27558 ||||||||||| || || || ||||| ||||| | || || || || ||||| || || Sbjct 61 GACAAGGAGGGTATCCCCCCTGACCAACAGCGCTTGATCTTCGCCGGAAAGCAGCTGGAA 120 Query 27559 GATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCT 27611 |||| ||| || || | || || || | || ||||| ||||||||||| || Sbjct 121 GATGGTCGCACTCTTTCTGATTACAACATTCAGAAGGAGTCCACTCTTCACCT 173 >seq1000 Length=18647 Score = 96.9 bits (106), Expect = 4e-15 Identities = 167/242 (69%), Gaps = 3/242 (1%) Strand=Plus/Plus Query 64615 GAGAAGGATGGACTGTTCAGGGCTATAGAGACTGTACCCGCTGTTACTAAAAAGGCTGAA 64674 ||||||| ||| |||| ||||| || ||||| || || | || ||||| ||| Sbjct 12145 GAGAAGGCCTTACTTTTCAACGCTATCGAAACTGTGCCTTGCGTGAAGAAGAAGGCAGAA 12204 Query 64675 TGGGCCATCCGGTGGATGA---ATCGTGGGTCGTCGTTTGGTCAGCGTCTCGCAGCTTTT 64731 ||||| || ||||| | | || | |||||| | | ||||||| || ||| Sbjct 12205 TGGGCGATGACATGGATTACCGACCGCTCGCGGTCGTTCGCTGAGCGTCTTTTGGCATTT 12264 Query 64732 GCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTAAAAAAG 64791 ||||||| ||||| ||||||||||| || ||||| |||| || ||| | || ||| Sbjct 12265 TCCTGTGTTGAAGGCATTTTCTTTTCCGGCTCATTTGCAGCTATCTTTTGGATCAAGAAG 12324 Query 64792 CGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGAGGGGCTC 64851 || || || ||||| || || | || || || || ||||| | | |||||||| ||| Sbjct 12325 CGAGGGCTCATGCCTGGATTGACTTTCTCCAATGAATTGATCAGTTGTGACGAGGGCCTC 12384 Query 64852 CA 64853 || Sbjct 12385 CA 12386 >seq1422 Length=2909 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 27511 ATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACC 27570 || || || ||||| |||||||| || ||||| || ||||| || || |||| |||||| Sbjct 2731 ATCCCGCCCGACCAACAGCGTCTGATCTTTGCCGGGAAGCAGCTTGAAGATGGGCGTACC 2790 Query 27571 CTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGT 27630 || ||||||| || | || || || ||||| |||||||| || | ||||||||||| Sbjct 2791 CTCTCAGACTACAACATTCAGAAAGAGTCCACCCTTCATCTTGTGCTCCGTCTTCGCGGC 2850 Query 27631 GG 27632 || Sbjct 2851 GG 2852 >seq9278 Length=305 Score = 93.3 bits (102), Expect = 5e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 27496 CAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTC 27555 |||||||||||||| ||||| || ||||| |||||| | || ||||| || ||||| ||| Sbjct 305 CAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGTTTGATCTTTGCGGGCAAGCAGCTC 246 Query 27556 GAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCT 27611 ||||| | || || || | || ||||| | || ||||| || ||||| ||||| Sbjct 245 GAGGACGGGCGCACTCTTTCCGATTATAACATTCAGAAGGAGTCTACTCTGCATCT 190 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || ||||||||||| || || ||||| ||||| |||||||| || || Sbjct 113 ATGCAAATTTTCGTCAAGACGCTCACGGGAAAGACCATTACCCTTGAGGTCGAATCGTCG 54 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCC 27518 || | || | || | ||||| || ||||||||||||||||| ||||| || Sbjct 53 GACACTATCGATAACGTCAAGGCGAAGATTCAGGACAAGGAGGGCATTCCCCC 1 >seq451 Length=165701 Score = 89.7 bits (98), Expect = 6e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| || || |||||||| || || |||||||| ||||| | Sbjct 12421 ATGCAAATCTTCGTCAAGACCCTCACGGGCAAGACGATCACCCTTGAGGTGGAGTCGTCT 12480 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 || | ||| | || | ||||| ||||| ||||||||||| || Sbjct 12481 GACACCATCGACAACGTCAAGGCCAAAATCCAGGACAAGGAAGG 12524 >seq925 Length=43645 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 64726 GCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTA 64785 ||||| || || || ||||| ||||||||||| || |||||| | || || ||| | Sbjct 13827 GCTTTCGCATGCGTAGAAGGGATTTTCTTTTCCGGCTCATTCGCCGCGATCTTTTGGTTG 13768 Query 64786 AAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGAG 64845 || || |||| |||||||||| || ||||| | |||||||| ||| || || ||| Sbjct 13767 AAGAAAAGGGGTTTGATGCCAGGACTATCGTTCGCAAACGAGCTTATCAGCCGAGATGAG 13708 Query 64846 GGGCTCCACCAAGAATTTGCG 64866 || || ||| ||| || ||| Sbjct 13707 GGTCTTCACACAGATTTCGCG 13687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570234163757280