Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001661215.1_202016-05-11] 10,694 sequences; 59,384,214 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq9840 111 1e-19 seq9278 105 4e-18 seq1422 98.7 6e-16 seq9206 95.1 8e-15 seq9205 93.3 3e-14 seq1421 93.3 3e-14 >seq9840 Length=425 Score = 111 bits (122), Expect = 1e-19 Identities = 149/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 34503 ATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTG 34562 |||||| || |||||| || ||||| ||||| ||||| ||||| |||| || ||||| Sbjct 237 ATGGAGCGTTGACTCCTTCTGGATGTTGTAATCAGAAAGAGTTCGACCGTCCTCGAGTTG 178 Query 34563 TTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622 || ||||| || |||| ||||| || || || || | |||||||| || ||||| Sbjct 177 CTTGCCGGCGAAAATTAGGCGCTGCTGATCGGGAGGAATGCCCTCCTTATCCTGAATCTT 118 Query 34623 TTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGG 34681 | | || || | || ||||| ||||||||||| || ||||| || |||| Sbjct 117 T-GCCTTGACATTGTCGATGGTGTCGGAAGACTCCACTTCCAGCGTGATCGTCTTGCCGG 59 Query 34682 TTAACGTTTTCACAAAAATCTGCAT 34706 | || || ||||||||||||||||| Sbjct 58 TCAATGTCTTCACAAAAATCTGCAT 34 >seq9278 Length=305 Score = 105 bits (116), Expect = 4e-18 Identities = 90/111 (81%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 34503 ATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTG 34562 ||| ||||| |||||| |||||||||||||| ||||| || ||| |||| || || || Sbjct 192 ATGCAGAGTAGACTCCTTCTGAATGTTATAATCGGAAAGAGTGCGCCCGTCCTCGAGCTG 251 Query 34563 TTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTC 34613 || || ||||| || ||||||||||||||||| || | ||||||||||| Sbjct 252 CTTGCCCGCAAAGATCAAACGCTGTTGGTCCGGGGGAATGCCCTCCTTGTC 302 >seq1422 Length=2909 Score = 98.7 bits (108), Expect = 6e-16 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | |||||| | ||| | ||| || ||| ||| || |||||||| || ||||| Sbjct 2852 CCGCCGCGAAGACGGAGCACAAGATGAAGGGTGGACTCTTTCTGAATGTTGTAGTCTGAG 2793 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || ||| | |||||||| || || |||||||| || | |||||||||||| ||||| Sbjct 2792 AGGGTACGCCCATCTTCAAGCTGCTTCCCGGCAAAGATCAGACGCTGTTGGTCGGGCGG 2734 >seq9206 Length=299 Score = 95.1 bits (104), Expect = 8e-15 Identities = 98/127 (77%), Gaps = 1/127 (1%) Strand=Plus/Minus Query 34497 CACCAAA-TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTT 34555 |||||| || |||||| |||||| |||||||| ||||| ||||| || || | |||| Sbjct 178 CACCAAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGAAAGAGTGCGACCATCTT 119 Query 34556 CAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTG 34615 | || || || ||||| || || || ||||||||||| || || | ||||||||||| Sbjct 118 CCAGCTGCTTTCCGGCGAAGATCAAGCGCTGTTGGTCAGGGGGGATACCCTCCTTGTCCT 59 Query 34616 TGATCTT 34622 |||||| Sbjct 58 GGATCTT 52 >seq9205 Length=338 Score = 93.3 bits (102), Expect = 3e-14 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 34503 ATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTG 34562 ||| ||||| |||||| |||||||||||||| ||||| || || |||| || || || Sbjct 225 ATGCAGAGTAGACTCCTTCTGAATGTTATAATCGGAAAGAGTGCGGCCGTCCTCGAGCTG 284 Query 34563 TTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTC 34613 || || || || || |||||||| |||||||| || | ||||||||||| Sbjct 285 CTTGCCCGCGAAGATCAAACGCTGCTGGTCCGGGGGAATACCCTCCTTGTC 335 >seq1421 Length=2902 Score = 93.3 bits (102), Expect = 3e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | |||||| | ||| | ||| || ||| ||| || |||||||| || ||||| Sbjct 2845 CCGCCGCGAAGACGGAGCACAAGATGAAGGGTGGACTCTTTCTGAATGTTGTAGTCTGAG 2786 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || ||| | ||||| || || || |||||||| || | |||||||||||| ||||| Sbjct 2785 AGGGTACGCCCATCTTCGAGCTGCTTCCCGGCAAAGATCAGACGCTGTTGGTCGGGCGG 2727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314688580307702