Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001661215.1_202016-05-11] 10,694 sequences; 59,384,214 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq2021 96.9 3e-15 seq9278 82.4 7e-11 >seq2021 Length=7336 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 39077 CCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAA 39136 |||| || || |||||||| || || ||||| ||||| | | || || |||| || | Sbjct 265 CCAAGTGAAGGGTGCTCTCCTTCTGAATATTGTAATCCGACAAAGTACGCCCGTCCTCCA 206 Query 39137 GCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGA 39196 ||| || || ||||| || || ||||||||||| | || | || ||| || ||| | Sbjct 205 ACTGCTTCCCGGCAAAGATGAGGCGCTGCTGGTCAGGAGGAATGCCCTCCTTATCCTGAA 146 Query 39197 TTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTC 39256 | ||| || | | | | |||||| ||||| || |||| |||||| | |||| Sbjct 145 TCTTCGCCTTCACATTGTCAATCGTATCCGAAGACTCGACTTCCAACGTGATCGTCTTTC 86 Query 39257 CCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||||| || || || ||||||||||| Sbjct 85 CCGTCAAAGTCTTCACGAAGATTTGCAT 58 >seq9278 Length=305 Score = 82.4 bits (90), Expect = 7e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| || || || |||||||||| ||| || || |||| || ||||| ||||||||||| Sbjct 204 CTCCTTCTGAATGTTATAATCGGAAAGAGTGCGCCCGTCCTCGAGCTGCTTGCCCGCAAA 263 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCC 39192 || | |||||| ||||| | ||| | || ||| |||||| Sbjct 264 GATCAAACGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCC 303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429489615979622