Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001661215.1_202016-05-11] 10,694 sequences; 59,384,214 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq2021 134 3e-26 seq9840 131 4e-25 seq7286 89.7 1e-12 seq1422 87.8 4e-12 seq1421 87.8 4e-12 seq109 86.0 1e-11 seq10544 84.2 5e-11 >seq2021 Length=7336 Score = 134 bits (148), Expect = 3e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 225510 GTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTG 225569 ||| || ||| || || || | ||||||||| | |||||| | ||| || || | ||| Sbjct 261 GTGAAGGGTGCTCTCCTTCTGAATATTGTAATCCGACAAAGTACGCCCGTCCTCCAACTG 202 Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 |||||| || ||||| || || || ||||| || ||||| || ||||| || || ||||| Sbjct 201 CTTCCCGGCAAAGATGAGGCGCTGCTGGTCAGGAGGAATGCCCTCCTTATCCTGAATCTT 142 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 ||||||| || || || || || | || || || |||||||||||||| ||||| Sbjct 141 CGCCTTCACATTGTCAATCGTATCCGAAGACTCGACTTCCAACGTGATCGTCTTTCCCGT 82 Query 225690 CAAAGTTTTTATGAACACTTGCAT 225713 |||||| || | ||| | |||||| Sbjct 81 CAAAGTCTTCACGAAGATTTGCAT 58 >seq9840 Length=425 Score = 131 bits (144), Expect = 4e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || || ||||| || || || || |||| |||||||| | | ||||| || || Sbjct 245 AGAACGAGATGGAGCGTTGACTCCTTCTGGATGTTGTAATCAGAAAGAGTTCGACCGTCC 186 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || ||||| || ||||| || || || || || ||||| ||||| || ||||| || Sbjct 185 TCGAGTTGCTTGCCGGCGAAAATTAGGCGCTGCTGATCGGGAGGAATGCCCTCCTTATCC 126 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || |||||| ||| ||| ||||||||||| || | ||||| || | |||||||||| Sbjct 125 TGAATCTTTGCCTTGACATTGTCGATGGTGTCGGAAGACTCCACTTCCAGCGTGATCGTC 66 Query 225682 TTGCCCGTCAAAGTTTT 225698 ||||| ||||| || || Sbjct 65 TTGCCGGTCAATGTCTT 49 Score = 118 bits (130), Expect = 3e-21 Identities = 121/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 ||||| || |||||||| || || || || || |||||||| || |||||||| |||||| Sbjct 419 CCATCCTCAAGCTGCTTGCCGGCAAAAATGAGACGTTGTTGATCAGGCGGAATCCCTTCC 360 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 ||||||||||| || ||| || ||||| || || |||| ||| || || | ||| Sbjct 359 TTGTCTTGGATTTTCGCCTTGACGTTGTCGATAGTATCGGAGGATTCGACTTCGAGGGTG 300 Query 225676 ATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || |||||||| |||| |||||| | ||| | ||||| Sbjct 299 ATGGTCTTGCCTGTCAGAGTTTTGACGAAAATCTGCAT 262 >seq7286 Length=304 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 225505 ACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCT 225564 || |||||||| || || || || |||| ||||| |||| | || | ||||| || Sbjct 1 ACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGACCATCCTCA 60 Query 225565 AGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAAT 225608 |||||||| |||||||||||||| |||||||||||||| || || Sbjct 61 AGCTGCTTTCCAGCGAAGATAAGGCGTTGTTGGTCGGGAGGGAT 104 >seq1422 Length=2909 Score = 87.8 bits (96), Expect = 4e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | || ||||| || || ||||| ||||| || | ||||| || | | || Sbjct 2846 CGAAGACGGAGCACAAGATGAAGGGTGGACTCTTTCTGAATGTTGTAGTCTGAGAGGGTA 2787 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAAT 225608 | ||||||||| ||||||||||| || ||||| || || |||||||||||||| || Sbjct 2786 CGCCCATCTTCAAGCTGCTTCCCGGCAAAGATCAGACGCTGTTGGTCGGGCGGGAT 2731 >seq1421 Length=2902 Score = 87.8 bits (96), Expect = 4e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | || ||||| || || ||||| ||||| || | ||||| || | | || Sbjct 2839 CGAAGACGGAGCACAAGATGAAGGGTGGACTCTTTCTGAATGTTGTAGTCTGAGAGGGTA 2780 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAAT 225608 | ||||||||| ||||||||||| || ||||| || || |||||||||||||| || Sbjct 2779 CGCCCATCTTCGAGCTGCTTCCCGGCAAAGATCAGACGCTGTTGGTCGGGCGGGAT 2724 >seq109 Length=45574 Score = 86.0 bits (94), Expect = 1e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 371365 AATGGTAATTTATGCATAGATAAACCAGGTACTCTCATATTAAATATCGTAGTAATAAAG 371424 || ||||||||||| | ||| | |||| | ||||||||| || | ||| | || || Sbjct 12698 AAAGGTAATTTATGTAAAGACATACCATTTGTTCTCATATTTAAAGTTGTACTTATGAAA 12757 Query 371425 TTTATAGCGCCTAGAAGAGAAGATATACCTGCAAGATGTAAACTAAATATTGCTAAATCG 371484 || ||||| |||| | |||||||| || || | |||| ||| ||||| |||||||| Sbjct 12758 TTAATAGCTCCTAATAAAGAAGATACTCCAGCTAAGTGTAGACTGAATATAGCTAAATCT 12817 Query 371485 ACGGAACCGCCGGAGTG 371501 || ||||| || || || Sbjct 12818 ACTGAACCACCTGAATG 12834 >seq10544 Length=351 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/100 (81%), Gaps = 3/100 (3%) Strand=Plus/Minus Query 6768 TGAGAGAATGATCAGCCACATTGGGACTGAAA-ACGGCCCAAGTCTTCTAAAAG-GGCAG 6825 |||||| |||||| |||||| ||||||||| | |||||||| | || ||| | ||||| Sbjct 219 TGAGAGGATGATCCGCCACACTGGGACTGAGACACGGCCCA-GACTCCTACGGGAGGCAG 161 Query 6826 CAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAG 6865 |||||| ||||||| ||||||||| | || | ||||| || Sbjct 160 CAGTGGGGAATATTGGACAATGGGGGGAACCCTGATCCAG 121 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192367803101636