Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001661215.1_202016-05-11] 10,694 sequences; 59,384,214 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq1000 163 4e-35 seq32 136 5e-27 seq179 104 3e-17 >seq1000 Length=18647 Score = 163 bits (180), Expect = 4e-35 Identities = 379/561 (68%), Gaps = 14/561 (2%) Strand=Plus/Minus Query 48132 AACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAA 48191 |||| || || || || || ||| || || || || | ||| || ||||| || || Sbjct 12410 AACAGCAAGCACGCGAAGTCGGTATGGAGGCCCTCGTCACAACTGATCAATTCATTGGAG 12351 Query 48192 AATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCA 48251 || || | || ||||| || || || || |||| |||||| || || || || || || Sbjct 12350 AAAGTCAATCCAGGCATGAGCCCTCGCTTCTTGATCCAAAAGATAGCTGCAAATGAGCCG 12291 Query 48252 GAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTA--ACTGGCTT 48309 |||||||| |||||||| || | |||||| ||| | ||| || | || | Sbjct 12290 GAAAAGAAAATGCCTTCAACACAGGAAAATGCCAAAAGACGCTCAGCGAACGACCGCGAG 12231 Query 48310 CGTTGTGTA-TCCACCGTTGT-GCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTC 48367 || | ||| |||| || | ||||| || ||||||||||| || ||||||| ||||| Sbjct 12230 CGGTCGGTAATCCAT-GTCATCGCCCATTCTGCCTTCTTCTTCACGCAAGGCACAGTTTC 12172 Query 48368 TATAGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTA--AA 48425 ||||| || || || ||| || || ||| ||| | | ||| || || |||| || Sbjct 12171 GATAGCGTTGAAAAGTAAGGCCTTCTCCTTGGGATCGGTGATGTAGGTGTCGATTAACAA 12112 Query 48426 AGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTC 48485 || ||| |||| || |||| ||||||||| | ||| || | || ||| | Sbjct 12111 GGAGTAT--GTTTCAGAATGAACATTTTCAATCATGACCTGGAAGGCATAGAAAGCCCAA 12054 Query 48486 GCTTCTGTGATCTGTACCTCC-GTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCC 48544 |||||| | | |||||| | | |||| | ||| ||| ||||| || || ||||| Sbjct 12053 GCTTCTCTCGGCGAAACCTCCTGAGCGAAATTTTCCAG-CAAGTTCTCGTTGACAATTCC 11995 Query 48545 ATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAG 48604 ||| || |||||||| || || || ||| || ||| | ||||| |||||||| Sbjct 11994 ATCGGACGCCGCAAAAAAAGCCAACACGTGTGAAAGGAAAGACCTTTCGCCAGAAGTCAG 11935 Query 48605 TTTAT---TCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGA 48661 | || ||||||| || || || | | ||||| ||| || | |||||||| || Sbjct 11934 GTGATTTGTCCAGTCGACGACGTCGTTCGCCAGATCTAATTCATCTGTCGTCCAAAAAGA 11875 Query 48662 TGCCTCTGCTTTTTTATACAT 48682 ||| || |||| ||| ||||| Sbjct 11874 TGCTTCGGCTTGTTTGTACAT 11854 >seq32 Length=1481398 Score = 136 bits (150), Expect = 5e-27 Identities = 374/568 (66%), Gaps = 10/568 (2%) Strand=Plus/Minus Query 48132 AACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAA 48191 |||| || |||||| ||||| || | || || |||| |||||| | || || ||| Sbjct 1084277 AACAATAGACATGCGAAATCGGTGTGCAAGCCCTCGTCTCGACTAATAAGCTCATTGGAA 1084218 Query 48192 AATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCA 48251 ||||| || || ||||| || |||||||| |||| ||| ||||||| || || || ||| Sbjct 1084217 AATGTCAGGCCAGGCATAAGACCACGTTTCTTGATCCAGAATATTGAGGCAAACGACCCA 1084158 Query 48252 GAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCG 48311 ||||||||||| ||||| || || ||||| || || | || || | | | | Sbjct 1084157 GAAAAGAATATCCCTTCGACAGCAGCAAAGGCAACTAGACGTTCCGCGAAGGTTGAATGT 1084098 Query 48312 TTGTGT---ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCT 48368 |||| | ||||| | | ||||||||||| || ||| | ||||| || || ||| Sbjct 1084097 TTGTCTGAAATCCATTTTAGAGCCCAATCAGCTTTGCGCTTGATGCAAGGAATGGTGTCT 1084038 Query 48369 ATAGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTA--AAA 48426 || || | || || | || | ||| || | ||| ||| || | || Sbjct 1084037 ATGGCGTCGAAAAGGTGGGCCCGCTCCTGCGGATCCTTGATGTAGCCATCGATAAGCAAC 1083978 Query 48427 GACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCG 48486 || |||| ||||||| || ||||| || || || ||||| || || || | | || Sbjct 1083977 GA--ATACGTTTCGGAATGGATATTCTCCATCATGATTTGAAAGCCATAGAAGGAACGCG 1083920 Query 48487 CTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCAT 48546 | || | | ||| || || |||||| | ||| | | ||||| ||||| || |||| Sbjct 1083919 CCTCGGGTACCTGCACTTCACCACAAAACCTTTCGACGAGGTTCTCGTTTACAATGCCAT 1083860 Query 48547 CACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGT--TGGAAGTCAG 48604 | || ||||| || || | ||||| |||||||| || | ||| | | Sbjct 1083859 CTGAGGCCGCAAAGAAAGCAAGAACATGCGATATAAAATACCGCTCATCATGGTTGAGAT 1083800 Query 48605 TTTA-TTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATG 48663 | | |||||||| || || | || | || | ||||||||||||||| ||||| | Sbjct 1083799 TGAAGTTCCAGTCCACGAAGTCATGGGAAAGGTCAAGTTCTTCAGCTGTCCAGAATGAGG 1083740 Query 48664 CCTCTGCTTTTTTATACATATTCCATAT 48691 | | ||||| || || | | |||||| Sbjct 1083739 CTTGAGCTTTCTTGTAGAATTGCCATAT 1083712 >seq179 Length=47363 Score = 104 bits (114), Expect = 3e-17 Identities = 114/152 (75%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 48132 AACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAA 48191 |||| | |||||| || || ||| |||||||||||||| || || | || || || Sbjct 9370 AACAAAAGACATGCGAAGTCGGTATGTAGACCTTCATCTCTGCTGATAAGCTCATTGGAG 9311 Query 48192 AATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCA 48251 || || | || ||||| | |||||||| || |||||||| || |||||||| || ||| Sbjct 9310 AAAGTCAATCCTGGCATCACACCACGTTTCTTCAGCCAAAAAATGGCCGCGAAGGAACCA 9251 Query 48252 GAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 ||||| || |||||||| ||| ||||| || Sbjct 9250 GAAAAAAAGATGCCTTCCACGCAGGCAAAGGC 9219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694575940148160