Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001661215.1_202016-05-11] 10,694 sequences; 59,384,214 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq32 149 9e-31 seq179 105 1e-17 >seq32 Length=1481398 Score = 149 bits (164), Expect = 9e-31 Identities = 379/569 (67%), Gaps = 12/569 (2%) Strand=Plus/Minus Query 46621 AACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAA 46680 |||| || |||||| ||||| || | ||| || |||| |||||| | || || ||| Sbjct 1084277 AACAATAGACATGCGAAATCGGTGTGCAAGCCCTCGTCTCGACTAATAAGCTCATTGGAA 1084218 Query 46681 AATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCA 46740 ||||| || |||||||| || ||||| || |||| ||| ||||| | || || || ||| Sbjct 1084217 AATGTCAGGCCAGGCATAAGACCACGTTTCTTGATCCAGAATATTGAGGCAAACGACCCA 1084158 Query 46741 GAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCA 46800 ||||||||||| ||||| ||||| || || || || || | || || | | | || Sbjct 1084157 GAAAAGAATATCCCTTCGACAGCAGCAAAGGCAACTAGACGTTCCGCGAAGGTTGAATGT 1084098 Query 46801 TTAT---GAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCT 46857 || | |||||| || ||||||||||||| || ||| | ||||| || || ||| Sbjct 1084097 TTGTCTGAAATCCATTTTAGAGCCCAATCAGCTTTGCGCTTGATGCAAGGAATGGTGTCT 1084038 Query 46858 ATAGCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTA--AAA 46915 || || | || || | || | ||| || | || ||| || | || Sbjct 1084037 ATGGCGTCGAAAAGGTGGGCCCGCTCCTGCGGATCCTTGATGTAGCCATCGATAAGCAAC 1083978 Query 46916 GACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTG 46975 || |||| |||| ||||| || || || || || ||||| || || || | | | Sbjct 1083977 GA--ATACGTTTCGGAATGGATATTCTCCATCATGATTTGAAAGCCATAGAAGGAACGCG 1083920 Query 46976 CTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGAC-AAATTCTCATTCACTATTCCA 47034 | || | | ||| || || |||||| | ||| ||| | ||||| || || || ||| Sbjct 1083919 CCTCGGGTACCTGCACTTCACCACAAAACCTTTC-GACGAGGTTCTCGTTTACAATGCCA 1083861 Query 47035 TCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATC--GGTAGTCA 47092 || || ||||| || || | ||||| |||||||| ||||| ||| | | Sbjct 1083860 TCTGAGGCCGCAAAGAAAGCAAGAACATGCGATATAAAATACCGCTCATCATGGTTGAGA 1083801 Query 47093 GTTTA-TTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGAC 47151 | | |||||||| || || | || | || | ||||||||||||||||||||| Sbjct 1083800 TTGAAGTTCCAGTCCACGAAGTCATGGGAAAGGTCAAGTTCTTCAGCTGTCCAGAATGAG 1083741 Query 47152 GCCTCTGCTTTTTTATACATATTCCATAT 47180 || | ||||| || || | | |||||| Sbjct 1083740 GCTTGAGCTTTCTTGTAGAATTGCCATAT 1083712 >seq179 Length=47363 Score = 105 bits (116), Expect = 1e-17 Identities = 242/356 (68%), Gaps = 15/356 (4%) Strand=Plus/Minus Query 46621 AACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAA 46680 |||| | |||||| || || ||| || ||||||||||| || || | || || || Sbjct 9370 AACAAAAGACATGCGAAGTCGGTATGTAGACCTTCATCTCTGCTGATAAGCTCATTGGAG 9311 Query 46681 AATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCA 46740 || || | || ||||| | ||||| || || |||||||| || |||||||| || ||| Sbjct 9310 AAAGTCAATCCTGGCATCACACCACGTTTCTTCAGCCAAAAAATGGCCGCGAAGGAACCA 9251 Query 46741 GAAAAGAATATGCCTTCTACAGCCGCGAATGCGAC-AAGTCTCTCTCC----GTAACTGG 46795 ||||| || |||||||| || || || || || | || || ||| | ||| | Sbjct 9250 GAAAAAAAGATGCCTTCCACGCAGGCAAAGGCTACGAGGTGGCT-TCCAAAGGCAAC-CG 9193 Query 46796 CATCATTATGAATCCACCTTTGA--GCCCAATCAGCCTTTTTCTTTACACAAGGCATTGT 46853 | || | ||||| ||| | |||||||| |||||| | || | || |||||| Sbjct 9192 CGGAATCTTCGATCCA--TTTCAATGCCCAATCCGCCTTTCTTTTGATGCACTCCATTGT 9135 Query 46854 TTCTATAGCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTA- 46912 ||| | |||| |||||| | ||| | ||| |||||| || || || | Sbjct 9134 TTCAAGCGCATCGAAGAGATGTAATCGTTCTCGGGTGTCTGCAACATAGGTGTCGATGAG 9075 Query 46913 -AAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAA 46967 ||||| |||| |||| ||||| | |||||| || |||||||| |||||||| Sbjct 9074 TAAAGA--ATACGTTTCGGAATGGACGTTTTCGATCATAATCTGAAAACCGTAAAA 9021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712839098494080