Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001661215.1_202016-05-11] 10,694 sequences; 59,384,214 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq10570 313 3e-80 seq179 149 7e-31 seq247 131 2e-25 seq1000 120 3e-22 >seq10570 Length=409 Score = 313 bits (346), Expect = 3e-80 Identities = 232/269 (86%), Gaps = 3/269 (1%) Strand=Plus/Minus Query 8344 TCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCG 8403 ||||||||| |||||| |||||||||||||||| ||||| ||||||| ||| ||||| Sbjct 315 TCTCACTCTATTGCCCTGGCTGGAGTGCAGTGGTGCAATCTCGGCTCACTACAAGCTCCG 256 Query 8404 CCTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAA 8463 ||||||||||||| || |||||||||||||||||||| ||||||||| ||||||| Sbjct 255 CCTCCCGGGTTCATGCCATTCTCCTGCCTCAGCCTCCCACATAGCTGGGACTACAGGCGC 196 Query 8464 AAGCCACCACGCCAAGCTAA-TTTTTGTATTTTTAGTAGAGAGAGGGTTTCACCATGTTG 8522 ||||||| ||| ||||| ||||| ||||||| ||||| | ||||||||||||||| Sbjct 195 CCGCCACCATGCCTGGCTAATTTTTTCTATTTTTCGTAGATACGGGGTTTCACCATGTTA 136 Query 8523 GCCAGGCTGGTCTCGAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTG 8582 |||||| ||||||||| ||||||||||| |||||||||| |||| |||||||||||||| Sbjct 135 GCCAGGATGGTCTCGATCTCCTGACCTC--GTGATCCACCCGCCTTGGCCTCCCAAAGTG 78 Query 8583 CTGGGATTACAGGCATGAGCCACCGCGCC 8611 |||||||||||||||||||||||| |||| Sbjct 77 CTGGGATTACAGGCATGAGCCACCACGCC 49 >seq179 Length=47363 Score = 149 bits (164), Expect = 7e-31 Identities = 378/571 (66%), Gaps = 13/571 (2%) Strand=Plus/Minus Query 23500 AACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAA 23559 ||||| | |||||| || || |||||| |||||||| || || || | ||||| || Sbjct 9370 AACAAAAGACATGCGAAGTCGGTATGTAGACCTTCATCTCTGCTGATAAGCTCATTGGAG 9311 Query 23560 AATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCG 23619 || || ||||||||||| | || ||||| || | |||||| || || || || || || Sbjct 9310 AAAGTCAATCCTGGCATCACACCACGTTTCTTCAGCCAAAAAATGGCCGCGAAGGAACCA 9251 Query 23620 GAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTA 23679 ||||| || || || || || |||||||| || || | | ||||| | | Sbjct 9250 GAAAAAAAGATGCCTTCCACGCAGGCAAAGGCTACGAGGTGGCTTCCAAAGGCAACCGCG 9191 Query 23680 TAATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCA 23739 |||| |||||||| || ||||| ||||| ||| | ||||| ||||||||| Sbjct 9190 GAATCTTCGATCCATTTCAATGCCCAATCCGCCTTTCTTTTGATGCACTCCATTGTTTCA 9131 Query 23740 ATTGCTTTTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAA 23799 | || | |||||| | |||| | |||| | ||| || || || |||||| Sbjct 9130 AGCGCATCGAAGAGATGTAATCGTTCTCGGGTGTCTGCAACATAGGTGTCGATGAGTAAA 9071 Query 23800 CTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCT 23859 |||| |||| ||||| | ||||| || ||||||||| || ||||| | | |||| Sbjct 9070 GAATACGTTTCGGAATGGACGTTTTCGATCATAATCTGAAAACCGTAAAACGAGCGAGCT 9011 Query 23860 TC---AG--ACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATAC 23914 || || ||||| || | | || | || || | | |||||||| || || | Sbjct 9010 TCCAAAGGCCCAATTTCGCAAC----AGAAGTTTTGTA-CAAGGTTTTCGTTCACGATGC 8956 Query 23915 CATCACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGATA 23974 | ||| |||||||| || ||||| |||| | || ||| | ||| | | ||| | Sbjct 8955 CGTCAGACGCAGCAAAAAATGCAAGGACATGGGTGATGAAAAACCGTTCGTTTGCTGAAA 8896 Query 23975 ---ATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAAC 24031 | | ||||||||||| ||| ||||| | |||||| || ||||||||| Sbjct 8895 GGCGAGTCTCCCAATCATTAAGATCGGACCGCAAATCGAGTTCATCGACCGTCCAAAAAG 8836 Query 24032 TTGCCAAGGCACGCTTATACATTAGCCAAAT 24062 || ||| |||| ||||| | ||| || Sbjct 8835 ACGCTTCGGCTTGCTTGTACATCATCCACAT 8805 >seq247 Length=45445 Score = 131 bits (144), Expect = 2e-25 Identities = 127/162 (78%), Gaps = 1/162 (1%) Strand=Plus/Plus Query 23500 AACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAA 23559 ||||||| ||| ||||| || ||| || ||||| || || || || | ||| || ||| Sbjct 37324 AACAATAGACAGGCAAAGTCCGTATGAAGTCCTTCGTCTCTGCTGATTAGTTCGTTCGAA 37383 Query 23560 AATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCG 23619 || ||||| |||||||| || || ||||| ||||||||||| | ||| ||||| |||||| Sbjct 37384 AAAGTTAAGCCTGGCAT-AAGCCCCGTTTCTTAATCCAAAAGACTGCTGCAAACGATCCG 37442 Query 23620 GAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGT 23661 || |||||||| || || ||| ||||||||| || | |||| Sbjct 37443 GAGAAGAAAATGCCTTCCACACACGCAAAGGCAACCAAACGT 37484 >seq1000 Length=18647 Score = 120 bits (132), Expect = 3e-22 Identities = 291/438 (66%), Gaps = 2/438 (0%) Strand=Plus/Minus Query 23500 AACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAA 23559 |||| || || || || || ||| ||||| || || | ||| ||||||||||| || Sbjct 12410 AACAGCAAGCACGCGAAGTCGGTATGGAGGCCCTCGTCACAACTGATCAATTCATTGGAG 12351 Query 23560 AATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCG 23619 || || ||||| ||||| | ||||| || || |||||||| || || |||||||| ||| Sbjct 12350 AAAGTCAATCCAGGCATGAGCCCTCGCTTCTTGATCCAAAAGATAGCTGCAAATGAGCCG 12291 Query 23620 GAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTA 23679 ||||||||||| || |||||| | ||| |||| |||||| | | || | Sbjct 12290 GAAAAGAAAATGCCTTCAACACAGGAAAATGCCAAAAGACGCTCAGCGAACGACCGCGAG 12231 Query 23680 TAATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCA 23739 || | ||||||| | | | ||| | |||||| || || || | ||||| Sbjct 12230 CGGTCGGTAATCCATGTCATCGCCCATTCTGCCTTCTTCTTCACGCAAGGCACAGTTTCG 12171 Query 23740 ATTGCTTTTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAA 23799 || || || || || || | || || | ||| || || || || || |||| || Sbjct 12170 ATAGCGTTGAAAAGTAAGGCCTTCTCCTTGGGATCGGTGATGTAGGTGTCGATTAACAAG 12111 Query 23800 CTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCT 23859 || |||||||||||| ||||||||| | ||| || |||| ||| | |||| Sbjct 12110 GAGTATGTTTCAGAATGAACATTTTCAATCATGACCTGGAAGGCATAGAAAGCCCAAGCT 12051 Query 23860 TCAGACAATTGAACATCATTA-AAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATC 23918 || | ||| || | | |||| || ||| || || ||||| ||||| ||||| Sbjct 12050 TCTCTCGGCGAAACCTCCTGAGCGAAATTTTCCAGC-AAGTTCTCGTTGACAATTCCATC 11992 Query 23919 ACTAGCAGCAAAGAAAGC 23936 || ||||| ||||| Sbjct 11991 GGACGCCGCAAAAAAAGC 11974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521418290091600