Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001661215.1_202016-05-11] 10,694 sequences; 59,384,214 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq2021 145 5e-30 seq9840 116 3e-21 seq9205 91.5 1e-13 seq9206 87.8 1e-12 seq106 87.8 1e-12 >seq2021 Length=7336 Score = 145 bits (160), Expect = 5e-30 Identities = 157/208 (75%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 44130 CCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCA 44189 ||| |||||| ||||||||||| || || |||||||| | | ||| |||| |||| Sbjct 265 CCAAGTGAAGGGTGCTCTCCTTCTGAATATTGTAATCCGACAAAGTACGCCCGTCCTCCA 206 Query 44190 GCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTA 44249 |||||||||||||||||| | |||||||| || | ||| | || ||||| ||| | Sbjct 205 ACTGCTTCCCGGCAAAGATGAGGCGCTGCTGGTCAGGAGGAATGCCCTCCTTATCCTGAA 146 Query 44250 TCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTC 44309 ||||| ||||| | | || || || | || || || |||| ||| |||||||||| Sbjct 145 TCTTCGCCTTCACATTGTCAATCGTATCCGAAGACTCGACTTCCAACGTGATCGTCTTTC 86 Query 44310 CCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||| | |||||||||||||||||||| Sbjct 85 CCGTCAAAGTCTTCACGAAGATTTGCAT 58 >seq9840 Length=425 Score = 116 bits (128), Expect = 3e-21 Identities = 156/213 (73%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC--GAGTTGGCGCTCGTCGT 44186 || || || ||||| |||||| |||||||||||||| | ||||| || |||| | Sbjct 242 ACGAGATGGAGCGTTGACTCCTTCTGGATGTTGTAATCAGAAAGAGTT--CGACCGTCCT 185 Query 44187 CCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCG 44246 | || ||||| ||||| || || | ||||||||||| | ||| | || ||||| ||| Sbjct 184 CGAGTTGCTTGCCGGCGAAAATTAGGCGCTGCTGATCGGGAGGAATGCCCTCCTTATCCT 125 Query 44247 TTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGT 44304 ||||| ||| || ||| | |||||||||| || ||||| |||| ||| ||||| Sbjct 124 GAATCTTTGCCTTGACATTGT--CGATGGTGTCGGAAGACTCCACTTCCAGCGTGATCGT 67 Query 44305 CTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| || || | |||||||| || || ||||| Sbjct 66 CTTGCCGGTCAATGTCTTCACAAAAATCTGCAT 34 >seq9205 Length=338 Score = 91.5 bits (100), Expect = 1e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 44193 GCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCT 44252 ||||||| ||||| ||||| ||||| || | | | | ||| ||||| ||| |||| Sbjct 1 GCTTCCCAGCAAAAATCAAGCGCTGTTGGGCAGGGGCAATACCCTCCTTGTCCTGAATCT 60 Query 44253 TCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCG 44312 || ||| | | | || ||||| | ||||| ||||| | ||||| |||||||||| Sbjct 61 TCGCCTTGACATTATCGATAGTGTCCGATGATTCGACCTCAAGGGTAATGGTCTTTCCCG 120 Query 44313 TGAGGGTCTTCACGAAGATTTGCAT 44337 |||| ||||| ||||| |||||||| Sbjct 121 TGAGCGTCTTGACGAAAATTTGCAT 145 >seq9206 Length=299 Score = 87.8 bits (96), Expect = 1e-12 Identities = 121/168 (72%), Gaps = 1/168 (1%) Strand=Plus/Minus Query 44128 CACCA-GGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGT 44186 ||||| ||||||| ||| |||||| || ||||||||||| | || ||| | || | Sbjct 178 CACCAAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGAAAGAGTGCGACCATCTT 119 Query 44187 CCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCG 44246 |||||||||| ||||| |||||||| ||||| || || | || | ||| ||||| ||| Sbjct 118 CCAGCTGCTTTCCGGCGAAGATCAAGCGCTGTTGGTCAGGGGGGATACCCTCCTTGTCCT 59 Query 44247 TTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCA 44294 ||||| ||| | | | ||||| || | ||| || || |||| Sbjct 58 GGATCTTGGCCTTGACGTTGTCAATGGTATCCGAGGACTCGACTTCCA 11 >seq106 Length=225739 Score = 87.8 bits (96), Expect = 1e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| ||| || ||| |||||||||||||||||| ||| ||| ||| | || ||| Sbjct 79694 ACCAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGCTGAGGGTGCGACCATCCTCC 79753 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGG 44229 |||||||| ||||| ||||||| ||||||||| || | ||| Sbjct 79754 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGAGG 79794 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359943481326198