Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001661215.1_202016-05-11] 10,694 sequences; 59,384,214 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq9840 143 6e-29 seq9206 122 2e-22 seq9205 96.9 8e-15 seq2021 93.3 1e-13 seq9278 91.5 4e-13 seq1422 87.8 4e-12 seq451 87.8 4e-12 seq7289 84.2 5e-11 seq7286 84.2 5e-11 seq1421 84.2 5e-11 >seq9840 Length=425 Score = 143 bits (158), Expect = 6e-29 Identities = 156/207 (75%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| ||||| || | || || || |||||||| || || ||||| || ||| Sbjct 37 CAGATTTTTGTGAAGACATTGACCGGCAAGACGATCACGCTGGAAGTGGAGTCTTCCGAC 96 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| |||||||||||| || || || || ||||| || ||||| Sbjct 97 ACCATCGACAATGTCAAGGCAAAGATTCAGGATAAGGAGGGCATTCCTCCCGATCAGCAG 156 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || |||||||| || || ||||| || || | |||||| | ||||| ||| || Sbjct 157 CGCCTAATTTTCGCCGGCAAGCAACTCGAGGACGGTCGAACTCTTTCTGATTACAACATC 216 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || || || ||||| || ||||| ||| Sbjct 217 CAGAAGGAGTCAACGCTCCATCTCGTT 243 Score = 118 bits (130), Expect = 3e-21 Identities = 119/155 (77%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| |||||||| ||||| || || ||||||||||| || ||| ||| || Sbjct 265 CAGATTTTCGTCAAAACTCTGACAGGCAAGACCATCACCCTCGAAGTCGAATCCTCCGAT 324 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| |||||||| || || || ||||| ||||| || || || || || ||| Sbjct 325 ACTATCGACAACGTCAAGGCGAAAATCCAAGACAAGGAAGGGATTCCGCCTGATCAACAA 384 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGG 178078 || || || || ||||| || ||||| || ||||| Sbjct 385 CGTCTCATTTTTGCCGGCAAGCAGCTTGAGGATGG 419 >seq9206 Length=299 Score = 122 bits (134), Expect = 2e-22 Identities = 132/175 (75%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 177954 ACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAG 178013 || |||||||| || || || ||| || ||||| || |||||||| ||||| ||| Sbjct 1 ACCATCACCCTGGAAGTCGAGTCCTCGGATACCATTGACAACGTCAAGGCCAAGATCCAG 60 Query 178014 GACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAA 178073 ||||| || || ||||| || ||||| || || | |||||||||||||| ||||| ||| Sbjct 61 GACAAGGAGGGTATCCCCCCTGACCAACAGCGCTTGATCTTCGCCGGAAAGCAGCTGGAA 120 Query 178074 GATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 ||||| | |||||| | ||||| ||| | || || || || || || || |||| Sbjct 121 GATGGTCGCACTCTTTCTGATTACAACATTCAGAAGGAGTCCACTCTTCACCTTG 175 >seq9205 Length=338 Score = 96.9 bits (106), Expect = 8e-15 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 178011 CAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTC 178070 |||||||| || || || || ||||||||||| || | |||||||| || || |||||| Sbjct 338 CAGGACAAGGAGGGTATTCCCCCGGACCAGCAGCGTTTGATCTTCGCGGGCAAGCAGCTC 279 Query 178071 GAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCT 178126 || || || | |||||| ||||||||||| | || || || || || |||||||| Sbjct 278 GAGGACGGCCGCACTCTTTCCGATTATAACATTCAGAAGGAGTCTACTCTGCATCT 223 Score = 86.0 bits (94), Expect = 2e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || || ||||| ||||| || || ||||| ||||| ||| || ||| Sbjct 142 CAAATTTTCGTCAAGACGCTCACGGGAAAGACCATTACCCTTGAGGTCGAATCATCGGAC 83 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || ||||| |||||||||||||| || || || | || | ||| || Sbjct 82 ACTATCGATAATGTCAAGGCGAAGATTCAGGACAAGGAGGGTATTGCCCCTGCCCAACAG 23 Query 178044 CGACTTATCTTCGCCGGAAA 178063 || | || || || || || Sbjct 22 CGCTTGATTTTTGCTGGGAA 3 >seq2021 Length=7336 Score = 93.3 bits (102), Expect = 1e-13 Identities = 126/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| |||||||| ||| | || ||||| |||||||| | || || || || || Sbjct 61 CAAATCTTCGTGAAGACTTTGACGGGAAAGACGATCACGTTGGAAGTCGAGTCTTCGGAT 120 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || ||||||||||| || || || || ||||| |||||||| Sbjct 121 ACGATTGACAATGTGAAGGCGAAGATTCAGGATAAGGAGGGCATTCCTCCTGACCAGCAG 180 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAA 178099 || || ||||| ||||| || ||| | || || || | ||| | | ||||| || Sbjct 181 CGCCTCATCTTTGCCGGGAAGCAGTTGGAGGACGGGCGTACTTTGTCGGATTACAA 236 >seq9278 Length=305 Score = 91.5 bits (100), Expect = 4e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || || ||||| ||||| || || ||||| ||||| ||| || ||| Sbjct 110 CAAATTTTCGTCAAGACGCTCACGGGAAAGACCATTACCCTTGAGGTCGAATCGTCGGAC 51 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCC 178033 || ||||| |||||||| |||||||||||||| || || || || || Sbjct 50 ACTATCGATAACGTCAAGGCGAAGATTCAGGACAAGGAGGGCATTCCCCC 1 Score = 87.8 bits (96), Expect = 4e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 178011 CAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTC 178070 |||||||| || || || || |||||||| || || | ||||| || || || |||||| Sbjct 305 CAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGTTTGATCTTTGCGGGCAAGCAGCTC 246 Query 178071 GAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCT 178126 || || || | |||||| ||||||||||| | || || || || || |||||||| Sbjct 245 GAGGACGGGCGCACTCTTTCCGATTATAACATTCAGAAGGAGTCTACTCTGCATCT 190 >seq1422 Length=2909 Score = 87.8 bits (96), Expect = 4e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| ||| | |||||||| || ||||| || ||||| ||| ||| || Sbjct 2578 CAGATTTTCGTGAAGACTTTGACAGGAAAGACCATCACTCTTGAGGTCGAATCCTCCGAT 2637 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 |||||||| || |||||| ||||| |||||||| || || Sbjct 2638 ACCATCGACAATGTCAAAGCCAAGATCCAGGACAAGGAGGG 2678 >seq451 Length=165701 Score = 87.8 bits (96), Expect = 4e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || ||||| || || ||||||||||| |||||||| || ||| Sbjct 12424 CAAATCTTCGTCAAGACCCTCACGGGCAAGACGATCACCCTTGAGGTGGAGTCGTCTGAC 12483 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 |||||||| |||||||| || || |||||||| ||||| Sbjct 12484 ACCATCGACAACGTCAAGGCCAAAATCCAGGACAAGGAAGG 12524 >seq7289 Length=746 Score = 84.2 bits (92), Expect = 5e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 178026 ATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACT 178085 ||||| || ||||||||||| ||||||||||||||||| |||||||| || ||| | || Sbjct 86 ATCCCGCCCGACCAGCAACGTCTTATCTTCGCCGGAAAGCAGCTCGAGGACGGACGAACC 27 Query 178086 CTTGCCGATTATAACGTCCAAAAAGA 178111 ||| | || |||||| | || || || Sbjct 26 CTTTCTGACTATAACATTCAGAAGGA 1 >seq7286 Length=304 Score = 84.2 bits (92), Expect = 5e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 178024 GAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGA 178083 |||||||||| ||||| ||||| ||||||||||| ||||| ||||| || ||||| | | Sbjct 106 GAATCCCTCCCGACCAACAACGCCTTATCTTCGCTGGAAAGCAGCTTGAGGATGGTCGCA 47 Query 178084 CTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 | || |||| || ||| |||| || || || || || || || || Sbjct 46 CGCTCTCCGACTACAACATCCAGAAGGAGTCGACCCTCCACCTGGT 1 >seq1421 Length=2902 Score = 84.2 bits (92), Expect = 5e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| || | |||||||| || ||||| || ||||| ||| ||| || Sbjct 2571 CAGATTTTCGTGAAGACCTTGACAGGAAAGACCATCACTCTTGAGGTCGAATCCTCCGAT 2630 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 |||||||| || |||||| ||||| |||||||| || || Sbjct 2631 ACCATCGACAATGTCAAAGCCAAGATCCAGGACAAGGAGGG 2671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203566268512636