Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Irpex_20lacteus_20[genbank_20GCA_5F001986395.2_202017-07-10] 317 sequences; 44,362,654 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq1 96.9 7e-15 seq58 91.5 3e-13 >seq1 Length=1832336 Score = 96.9 bits (106), Expect = 7e-15 Identities = 125/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 157274 TTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCATCCACTCGAATGGGTTG 157333 ||||| || ||||||||||| |||||||| || ||||| ||||| | ||||| ||||| Sbjct 895689 TTCTCGAAGAAGTTGGTCTTGCCCTGGAGCGAGATCATATCCATGAAATCGAAGGGGTTC 895748 Query 157334 GCGCAGTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGTAGTCCGCCACAAACTTG 157393 | ||||||| | | |||| || ||| | |||| |||||| || |||| | Sbjct 895749 GTCGAGTTGTAGTGCCTCTCGTTACCAAGCGCGCACAGCAGACGGTCCGCGACGAACTCG 895808 Query 157394 ATGTACTCTGTCATGCTCTTCTCGCTGATACCGATGAGCGCGACGGGAAGCGC 157446 ||||||| ||| |||| || | || |||||||| | |||||| ||||| Sbjct 895809 ATGTACTGGCACATCAACTTCGCGTTCATGCCGATGAGAGAGACGGGGAGCGC 895861 Score = 87.8 bits (96), Expect = 4e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 157258 GTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCAT 157317 |||||||| ||| | |||||||| ||||| ||||| ||||| || || ||||||||||| Sbjct 898664 GTACTCGGACACGCGCTTCTCAAAGAAGTTTGTCTTCCCCTGCAGGGAGATCATGTCCAT 898605 Query 157318 CCACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGTA 157377 | ||||| ||||| ||| || ||| |||||||| ||| || | ||| | Sbjct 898604 AAAGTCGAACGGGTTCGCGGCGTGGTAGTGCTTGTCGTTCCCGAGAGCCTGTAGCAGGCG 898545 Query 157378 GTCCGCCACAAACTTGATGTA 157398 ||| || || |||| |||||| Sbjct 898544 GTCTGCTACGAACTCGATGTA 898524 >seq58 Length=3253204 Score = 91.5 bits (100), Expect = 3e-13 Identities = 147/204 (72%), Gaps = 8/204 (4%) Strand=Plus/Plus Query 248893 CAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGC-- 248950 ||||||||| | ||||| || ||| |||| || |||||| | ||||| || ||||| Sbjct 1338506 CAGCACATGCTCATGCGTGTCGCTATCGGTATCCACAAGAACGACATTGAC--CGTGCCA 1338563 Query 248951 TCGAGACGTACACCGGAATGAGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCA 249010 | ||||| |||| ||| || || | | || ||||| |||| || ||||||| Sbjct 1338564 TTGAGACCTACAATCTCATGTCCGAGCGTTACTTCACTCATGCGTCACCTACCCTCTTCA 1338623 Query 249011 ACGCCGGTA-CCGTCAACAATCAGCTGAGCTCGTGCTTTCTT-CTTGCCATGCAAGACGA 249068 ||||||| | || ||| | ||| || |||||||| |||||| | |||| | ||||| Sbjct 1338624 ACGCCGGCACCCCTCATC-CTCAACTCAGCTCGTG-TTTCTTGGTATGCATGAAGGACGA 1338681 Query 249069 CTCTGTCGACGGCATTTATGACAC 249092 ||| | || ||||| |||||||| Sbjct 1338682 CTCCATAGAGGGCATCTATGACAC 1338705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073762038830656