Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Irpex_20lacteus_20[genbank_20GCA_5F001986395.2_202017-07-10] 317 sequences; 44,362,654 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1 141 1e-28 >seq1 Length=1832336 Score = 141 bits (156), Expect = 1e-28 Identities = 413/624 (66%), Gaps = 14/624 (2%) Strand=Plus/Plus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || || || ||| ||||| |||||||| | || || | ||||| || || ||||| Sbjct 895959 CAGGCAAAGTCGGTGTGCATGCCCTCGTCACGGCTGATGAGCTCGTTGGAGAAGGTGAGA 896018 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 || ||||| ||||||||||| || ||||| || || || ||||| || ||||| |||||| Sbjct 896019 CCAGGCATCAGGCCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGAGCCGGAGAAGAAG 896078 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCC--ATAACCGGCGC-TGTCATGT 33758 || || || || || || ||||| | || | ||| | | || | | |||| ||| Sbjct 896079 ATACCCTCGACGGCGGCGAAGGCGACGAGACGCTCGGCGAAGGACGAGTTCTTGTC-TGT 896137 Query 33759 -ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 33817 ||||| | ||||| ||||||||||| || | || || || || || ||||| | Sbjct 896138 GATCCAGCGCAGGGCCCAGTCGGCCTTCTTCTTGATGCAGGGGATGGTCTCGATGGCGTC 896197 Query 33818 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 33877 ||||| || | | || || || | || || ||||| | || || | Sbjct 896198 GAAGAGGTATTCGCGCTGCTTGGGGTCCTTGATGTAGGTGTCGATGAGGAGGGAGTATGT 896257 Query 33878 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 33937 || || || ||||| || || ||||| || |||||||| || | ||||||| Sbjct 896258 CTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCAACGCGCCTCGGCGGC 896317 Query 33938 CTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGC 33997 |||||| || | | ||||| || | | || || || || || || || ||| || Sbjct 896318 CTGCACCTCGTTGGAGAATCGCTCGACGAGGTTCTCGTTGACGATACCGTCGGAGGCAGC 896377 Query 33998 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATT---CC 34053 || || || | || || || || | |||| || ||| || || || || Sbjct 896378 GAAGAAGGCAAGGACGTGGGAGATGAAGTGGCGCTCGT-TGTCGTTGAGCTTCTTCTCCC 896436 Query 34054 AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 34113 | || | || || || | |||| || || ||||||| || || ||||| |||| Sbjct 896437 AGTCGTGCTGGTCCTTGGAGAGGTCCATCTCCTCTGCTGTCCAGAAGGAGGCCTCGGCCT 896496 Query 34114 TTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATC-TAT-TTGG 34171 | || ||||| | |||||| ||||| |||||||| ||||| | ||| || | | | |||| Sbjct 896497 TCTTGTACATTTGCCAGATCTCATGGTATTGGATAGGGAATAGAACGAAGCGTCTCTTGG 896556 Query 34172 ATTTGGTGCAAGGATAGGTTCCAT 34195 | | | || |||| ||| ||||| Sbjct 896557 ACTCGATG--AGGAGAGGCTCCAT 896578 Score = 113 bits (124), Expect = 6e-20 Identities = 288/434 (66%), Gaps = 7/434 (2%) Strand=Plus/Minus Query 33578 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGT 33637 || ||| || || ||| ||||| |||||||||| ||| || | |||||| || || || Sbjct 898313 CAGACACGCAAAGTCGGTGTGCATGCCCTCGTCTCGACTGATGAGTTCGTTCGAGAAAGT 898254 Query 33638 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAA 33697 | || ||||| ||||||||||| || | ||||||||| || || || || || || || Sbjct 898253 CAAGCCTGGCATAAGGCCACGCTTCTTCAACCAAAATATCGACGCAAAGGACCCAGAGAA 898194 Query 33698 GAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA-ACCGGC--GCTGTC 33754 ||| || ||||| || | ||||| || | || ||| | ||| | || | |||| Sbjct 898193 GAATATACCTTCCACGACCGCAAACGCCACCAGCCTCACCCCAAAGGACGTCCTTTTGTC 898134 Query 33755 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 33814 | ||||||| ||||||| || |||||| | || | ||| || | || || || || Sbjct 898133 AGATATCCACCGGAGAGCCCAGTCCGCCTTCCTCTTGATACACGGGACAGTCTCAATCGC 898074 Query 33815 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCA--AAAGACTA 33872 | ||| | ||| | || || || | ||| || || || | || || | Sbjct 898073 AGCAAACAAATACTCCCGCTCCCGTGGGTCCTTGATATAGGTGTCAATGAGCAACGA--A 898016 Query 33873 TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCG 33932 ||| | || || || | ||| || || ||||| || ||||||||||| | |||||| Sbjct 898015 TACGTCTCGGAGTGCACGTTCTCCATCATGATCTGGAACCCGTAGAAACAGCGCGCCTCG 897956 Query 33933 GTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTG 33992 | | || || || | | || || || | | ||||| ||||| || || || | Sbjct 897955 GCGACTTGGACGTCGTTGGAGAACCGCTCGACGAGGTTTTCGTTCACGATGCCGTCGGAG 897896 Query 33993 GCTGCAAAAAACGC 34006 || || || || || Sbjct 897895 GCGGCGAAGAAGGC 897882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629815104347760