Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Irpex_20lacteus_20[genbank_20GCA_5F001986395.2_202017-07-10] 317 sequences; 44,362,654 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq165 120 3e-22 seq1 116 4e-21 seq54 102 8e-17 >seq165 Length=362420 Score = 120 bits (132), Expect = 3e-22 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | || | ||||| |||||||| || || |||||||||||| Sbjct 207010 GCCTCCACGAAGACGAAGCACGAGGTGAAGAGTAGACTCCTTCTGGATGTTATAATCGGA 206951 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | ||| || |||||||| ||||| |||| ||||| || ||||||||||| Sbjct 206950 GAGAGTACGACCGTCCTCAAGCTGTTTGCCAGCGAAGATGAGACGCTGTTGATCGGGAGG 206891 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTG-TTCCACTGTGTCGGTGGGCTCCA 139715 ||||| || ||||| ||| | ||| ||| | | || | |||||| || ||| | Sbjct 206890 GATGCCCTCCTTGTC-TTGAATCTTTCCCTTAACAGCCTCGATACTGTCGGAGGACTCGA 206832 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 | |||| ||| | ||||||||||| | ||| || ||||| || |||||| Sbjct 206831 CTTCAAGGGTGATGGTCTTGCCGGTGAGCGTCTTAACGAAGATCTGCATA 206782 Score = 89.7 bits (98), Expect = 5e-13 Identities = 161/229 (70%), Gaps = 5/229 (2%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||||| | | | ||| | |||||||| || |||||||| |||||| Sbjct 207235 GCCTCCACGGAGACGCACACC-AGGTGGAGAGTAGACTCCTTCTGAATGTTGTAATCGGA 207177 Query 139597 CATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 139655 | || | || | |||||||||||||| || ||| ||||||| || || || || |||| Sbjct 207176 AAGGGTACGTCCA-TCTTCGAGCTGTTTGCCGGCAAAGATCAGGCGCTGTTGGTCCGGAG 207118 Query 139656 GTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 | ||||| || ||||| ||| || || | || | |||||| || ||| | Sbjct 207117 GGATGCC-TCCTTGTCCTGGATCTTGCCCTTCACGGCCTCGATACTGTCGGAGGACTCAA 207059 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | |||| ||| | ||||||||||| | || || || || || ||||| Sbjct 207058 CTTCAAGGGT-ATGGTCTTGCCGGTGAGAGTCTTGACAAAGATCTGCAT 207011 >seq1 Length=1832336 Score = 116 bits (128), Expect = 4e-21 Identities = 157/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 52837 GAGGCCGTCGACATTGAAAAAGAGTTTTTTACGGACGCTTTACCCGTATCATTGTTGGGC 52896 |||||||||| ||| || | ||||| | |||||||| | ||||| || | | ||| Sbjct 895897 GAGGCCGTCGCCATCGAGCAGGAGTTCCTGACGGACGCGCTCCCCGTCTCTCTCATCGGC 895838 Query 52897 ATGAACGCGACCATGATGTGCGAGTACATCGAGTTTGTTGCGGACAGACTGTTGATGC-A 52955 |||||||||| |||||||| ||||||||||||| || |||||| | ||| || ||| Sbjct 895837 ATGAACGCGAAGTTGATGTGCCAGTACATCGAGTTCGTCGCGGACCGTCTGCTG-TGCGC 895779 Query 52956 GCTCGGTCAGCCGAAATACTATAATGCGCGTAACCCCTTTTCGTTTATGAACAACATATC 53015 ||| ||| | || |||| || || |||||||| || ||| | | || || Sbjct 895778 GCTTGGTAACGAGAGGCACTACAACTCGACGAACCCCTTCGATTTCATGGATATGATCTC 895719 Query 53016 GCTCGAGGGCAAAACAAACTTTTTCGAGAGACGTGT 53051 |||| ||||||| || ||||| ||||||| ||||| Sbjct 895718 GCTCCAGGGCAAGACCAACTTCTTCGAGAAGCGTGT 895683 >seq54 Length=1324731 Score = 102 bits (112), Expect = 8e-17 Identities = 165/235 (70%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 || || || || | ||| | ||| | ||||| |||||||| || || ||||| ||||| Sbjct 968055 TGACCACCACGGAGACGAAGAACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCA 967996 Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 | |||| || |||||||| || ||||| |||||| || ||||| || ||| Sbjct 967995 GAAAGAGTGCGACCATCCTCGAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCCGGA 967936 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGT-TCCACTGTGTCGGTGGGCTC 139713 || ||||| || ||||| ||| | || || | | || | | ||||| | ||| Sbjct 967935 GGGATGCCCTCCTTGTCC-TGAATCTTACCCTTGACGGCCTCGATGGAGTCGGAAGACTC 967877 Query 139714 CACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 ||||||| || | ||||||||||||||| || || ||||| || |||||| || Sbjct 967876 GACCTCAAGCGTGATCGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCATACCT 967822 Score = 86.0 bits (94), Expect = 6e-12 Identities = 143/207 (69%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| || ||||| || || ||||| || ||| || || | || |||||||| Sbjct 967516 TGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGACAAGGTACGACCATCCTCGAGCTGC 967457 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 || || || |||| ||||| ||||| |||||||| ||||| || || || ||| || Sbjct 967456 TTGCCGGCGAAGATGAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTATCCTGGATCTTG 967397 Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741 || | || | | ||| | | ||| ||||||| || | ||||||||||||| Sbjct 967396 CCCTTGACGGCCTCGATAGAGTCAGAAGACTCGACCTCAAGCGTGATCGTCTTGCCGGTC 967337 Query 139742 AACGTTTTTACGAATATTTGCATAGCT 139768 || || || ||||| || |||||| || Sbjct 967336 AAAGTCTTGACGAAGATCTGCATACCT 967310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496062034346400