Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Irpex_20lacteus_20[genbank_20GCA_5F001986395.2_202017-07-10] 317 sequences; 44,362,654 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq257 140 2e-28 seq176 140 2e-28 seq267 134 9e-27 >seq257 Length=1005854 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 1001423 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 1001482 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 1001483 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 1001517 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| | |||||| ||||||| |||||||||||||||||||||||||||||||||| | Sbjct 1003397 CTCTCTTTCCAAAGTGCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 1003456 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||| ||| Sbjct 1003457 GCCAATATTTAGCTTTA 1003473 >seq176 Length=37954 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 3393 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 3452 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 3453 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 3487 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 12912 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 12971 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 12972 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 13006 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 22432 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 22491 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 22492 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 22526 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 31952 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 32011 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 32012 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 32046 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| | |||||| ||||||| |||||||||||||||||||||||||||||||||| | Sbjct 5367 CTCTCTTTCCAAAGTGCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 5426 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||| ||| Sbjct 5427 GCCAATATTTAGCTTTA 5443 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| | |||||| ||||||| |||||||||||||||||||||||||||||||||| | Sbjct 14886 CTCTCTTTCCAAAGTGCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 14945 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||| ||| Sbjct 14946 GCCAATATTTAGCTTTA 14962 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| | |||||| ||||||| |||||||||||||||||||||||||||||||||| | Sbjct 24406 CTCTCTTTCCAAAGTGCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 24465 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||| ||| Sbjct 24466 GCCAATATTTAGCTTTA 24482 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| | |||||| ||||||| |||||||||||||||||||||||||||||||||| | Sbjct 33926 CTCTCTTTCCAAAGTGCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 33985 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||| ||| Sbjct 33986 GCCAATATTTAGCTTTA 34002 >seq267 Length=405854 Score = 134 bits (148), Expect = 9e-27 Identities = 182/254 (72%), Gaps = 0/254 (0%) Strand=Plus/Plus Query 6234 AAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCT 6293 ||| |||||||||| || || ||||| || || |||||| |||||| | || |||||| Sbjct 53746 AAGATCGAGGGTAAAGGCAATGGTATCAAGACGGTCATTCCTAACATGGCAGACGTCGCT 53805 Query 6294 AAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCT 6353 |||||| | || ||| |||| ||||| || || | ||||| ||||| || ||||| Sbjct 53806 CGCGCGCTCAGTCGTCCTCCCACGTACCCCACCAAGTTCTTCGGATGCGAGCTCGGCGCG 53865 Query 6354 CAGACGCAGTTTGATCACAAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCC 6413 |||||| || || | || |||||||| | |||||| ||||| |||| || | || Sbjct 53866 CAGACGTCTTTCGACGAGAAGAACGAGCGGTACATCGTCAACGGGGCGCACGACGCCACC 53925 Query 6414 AAGCTGCAGGACTTACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGAT 6473 ||||| | || | || |||| ||| || ||| || || ||||| | ||| | Sbjct 53926 AAGCTCCGCGAACTCCTGGACGTCTTCATCGACAAATTCGTCCTGTGCAAGTCCTGCAAG 53985 Query 6474 AACCCGGAGACCGA 6487 ||||||||||| || Sbjct 53986 AACCCGGAGACGGA 53999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334945905952427