Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Irpex_20lacteus_20[genbank_20GCA_5F001986395.2_202017-07-10] 317 sequences; 44,362,654 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq54 98.7 9e-16 seq165 96.9 3e-15 >seq54 Length=1324731 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| | | || || || || || || ||||| ||||| || ||||| Sbjct 968052 CCACCACGGAGACGAAGAACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCAGAA 967993 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || | ||| || | || || || ||| | ||||| || ||||||||||| || Sbjct 967992 AGAGTGCGACCATCCTCGAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCCGGAGGG 967933 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 ||||| || || || ||||| || |||| || || | || ||||||||||||||| Sbjct 967932 ATGCCCTCCTTGTCCTGAATCTTACCCTTGACGGCCTCGATGGAGTCGGAAGACTCGACC 967873 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || | ||| |||||||| | || || || || || ||||| Sbjct 967872 TCAAGCGTGATCGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 967826 Score = 96.9 bits (106), Expect = 3e-15 Identities = 166/241 (69%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| || || | | || || || || || |||||||| |||||||| || ||| Sbjct 967315 ATACCTCCACGAAGACGGAGGACGAGGTGAAGAGTAGATTCCTTCTGGATATTGTAGTCG 967256 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| | || || | || || || ||| | || | || ||||||||||| Sbjct 967255 GAGAGGGTCCGACCGTCCTCGAGCTGCTTGCCGGCGAAAATAAGACGCTGCTGGTCCGGA 967196 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| || || || || ||||| || ||||| || || | || ||| || ||||| Sbjct 967195 GGAATACCCTCCTTGTCCTGAATCTTGCCTTTGACGGCCTCGATGGAGTCAGAGGACTCA 967136 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGCGACCA 45350 || |||||||| | || || || || | || || ||||| || ||||| ||| || | Sbjct 967135 ACCTCGAGAGTGATGGTCTTTCCAGTCAAGGTCTTGACAAAGATCTGCATACCGCCACGA 967076 Query 45351 A 45351 | Sbjct 967075 A 967075 Score = 87.8 bits (96), Expect = 2e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 45135 AGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAAT 45194 ||||| || || || ||||| ||||| || || ||| | ||| | ||| || | Sbjct 967519 AGATGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGACAAGGTACGACCATCCTCGAGC 967460 Query 45195 TGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATT 45254 || || || ||| | || | || |||||||| || || ||||| || ||||| || || Sbjct 967459 TGCTTGCCGGCGAAGATGAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTATCCTGGATC 967400 Query 45255 TTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCG 45314 || |||| || || | | ||| ||||||||||| || || || | ||| |||||| Sbjct 967399 TTGCCCTTGACGGCCTCGATAGAGTCAGAAGACTCGACCTCAAGCGTGATCGTCTTGCCG 967340 Query 45315 GTTAGAGTTTTTACAAAAATTTGCAT 45340 || | ||| || || || || ||||| Sbjct 967339 GTCAAAGTCTTGACGAAGATCTGCAT 967314 >seq165 Length=362420 Score = 96.9 bits (106), Expect = 3e-15 Identities = 147/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 45135 AGATGCAGCGTTGATTCCTTTTGGATATTATAATC-GCTGACGGTTTTAGAATCGTCCAA 45193 ||||| ||||| |||||||| ||||| || ||||| | | ||| | | || |||| Sbjct 207441 AGATGAAGCGTCGATTCCTTCTGGATGTTGTAATCCGATAACGTGCGTCCA-TCCTCCAG 207383 Query 45194 TTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAAT 45253 || || || ||| | ||||| || || || || || ||||| || || || || || || Sbjct 207382 CTGCTTGCCCGCGAAGATCAAGCGCTGTTGATCGGGAGGAATACCCTCCTTGTCCTGGAT 207323 Query 45254 TTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCC 45313 || ||||| || || | |||| ||||||||||| ||||| |||| || || || Sbjct 207322 CTTGCCTTTGACAGCCTCGATACTGTCAGAAGACTCGACCTCGAGGGTAATTGTCTTTCC 207263 Query 45314 GGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || || || |||||||| Sbjct 207262 CGTAAGCGTCTTCACGAATATTTGCAT 207236 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| || || | | ||| || || || || || ||||| ||||| ||||||||| Sbjct 207012 ATGCCTCCACGAAGACGAAGCACGAGGTGAAGAGTAGACTCCTTCTGGATGTTATAATCG 206953 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || || | || || | ||||| || ||| | || | || || || || || Sbjct 206952 GAGAGAGTACGACCGTCCTCAAGCTGTTTGCCAGCGAAGATGAGACGCTGTTGATCGGGA 206893 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || ||||| || || |||||||| ||| || | || || | ||||||| |||||| Sbjct 206892 GGGATGCCCTCCTTGTCTTGAATCTTTCCCTTAACAGCCTCGATACTGTCGGAGGACTCG 206833 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || || | || |||||||| || || || || || || ||||| Sbjct 206832 ACTTCAAGGGTGATGGTCTTGCCGGTGAGCGTCTTAACGAAGATCTGCAT 206783 Score = 93.3 bits (102), Expect = 4e-14 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 45135 AGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAAT 45194 || || || || || ||||| ||||||||||| ||| | ||| ||| || | Sbjct 206706 AGGTGAAGGGTAGACTCCTTCTGGATATTATAGTCGGAAAGGGTACGTCCATCTTCAAGC 206647 Query 45195 TGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATT 45254 || || || ||| | || | || || ||||| || || ||||| || ||||||||||| Sbjct 206646 TGCTTGCCGGCGAAGATAAGACGCTGTTGGTCGGGAGGGATGCCCTCCTTATCTTGAATC 206587 Query 45255 TTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCG 45314 || || | ||| || | | || ||||||||||| || || || | || |||||| Sbjct 206586 TTGCCCTTCACCGCCTCAATACTATCAGAAGACTCGACCTCAAGGGTGATAGTCTTGCCG 206527 Query 45315 GTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| || ||||| || ||||| Sbjct 206526 GTGAGAGTCTTGACAAAGATCTGCAT 206501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452001408937320