Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Irpex_20lacteus_20[genbank_20GCA_5F001986395.2_202017-07-10] 317 sequences; 44,362,654 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq54 102 6e-17 seq165 84.2 2e-11 >seq54 Length=1324731 Score = 102 bits (112), Expect = 6e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || || || |||||||| || || || | ||| |||| || | |||||| ||||| || Sbjct 967276 TCCTTCTGGATATTGTAGTCGGAGAGGGTCCGACCGTCCTCGAGCTGCTTGCCGGCGAAA 967217 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || || ||||| || |||| |||| ||||||||||| |||||| ||| || | Sbjct 967216 ATAAGACGCTGCTGGTCCGGAGGAATACCCTCCTTGTCCTGAATCTTGCCTTTGACGGCC 967157 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | || || || | ||| ||||| | || || || ||||| ||||| || || ||| Sbjct 967156 TCGATGGAGTCAGAGGACTCAACCTCGAGAGTGATGGTCTTTCCAGTCAAGGTCTTGACA 967097 Query 48756 AAAATCTGCAT 48766 || |||||||| Sbjct 967096 AAGATCTGCAT 967086 Score = 98.7 bits (108), Expect = 8e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || || || ||||||||||| ||| | ||| | || || | |||||| || || || Sbjct 968017 CTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGACCATCCTCGAGCTGCTTGCCAGCGAA 967958 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 |||| ||||| || |||| || | |||||||||||| |||||| || || | Sbjct 967957 GATCAAGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGAATCTTACCCTTGACGGC 967898 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | || || || | ||| ||||| | ||| ||||| || || ||||| || || || Sbjct 967897 CTCGATGGAGTCGGAAGACTCGACCTCAAGCGTGATCGTCTTGCCGGTCAAGGTCTTGAC 967838 Query 48755 AAAAATCTGCAT 48766 || |||||||| Sbjct 967837 GAAGATCTGCAT 967826 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48563 ATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTG 48622 ||| || ||| ||| || ||||| ||||| ||||| ||| | || | || || | ||| Sbjct 967801 ATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGAAAGAGTACGGCCATCCTCGAGCTG 967742 Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682 ||| || || || || || ||||| || || | || | |||||||||||| ||||| Sbjct 967741 CTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTT 967682 Query 48683 TTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGT 48742 | || || | | | || || || | ||| ||||| | ||| || || ||||| || Sbjct 967681 TCCCTTCACGGCCTCGATGGAGTCAGAAGACTCGACCTCGAGCGTGATAGTCTTTCCGGT 967622 Query 48743 CAAAGTTTTTACAAAAATCTGCAT 48766 ||| || || || || |||||||| Sbjct 967621 CAAGGTCTTGACGAAGATCTGCAT 967598 >seq165 Length=362420 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48563 ATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTG 48622 ||| ||||| || || || || |||||||| |||| | || | || |||| ||| Sbjct 207439 ATGAAGCGTCGATTCCTTCTGGATGTTGTAATCCGATAACGTGCGTCCATCCTCCAGCTG 207380 Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682 ||| || || || |||| ||||||||||| | |||| ||||||||||| ||||| Sbjct 207379 CTTGCCCGCGAAGATCAAGCGCTGTTGATCGGGAGGAATACCCTCCTTGTCCTGGATCTT 207320 Query 48683 TTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGT 48742 ||| |||| | | | || || | ||| ||||| | ||||| || |||||||| Sbjct 207319 GCCTTTGACAGCCTCGATACTGTCAGAAGACTCGACCTCGAGGGTAATTGTCTTTCCCGT 207260 Query 48743 CAAAGTTTTTACAAAAATCTGCAT 48766 | || || || || || ||||| Sbjct 207259 AAGCGTCTTCACGAATATTTGCAT 207236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380936128271391