Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Irpex_20lacteus_20[genbank_20GCA_5F001986395.2_202017-07-10] 317 sequences; 44,362,654 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq165 120 2e-21 seq54 89.7 3e-12 >seq165 Length=362420 Score = 120 bits (132), Expect = 2e-21 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||||||||| || || || ||||| ||| || || | |||||||| | ||||| Sbjct 207004 ACGAAGACGAAGCACGAGGTGAAGAGTAGACTCCTTCTGGATGTTATAATCGGAGAGAGT 206945 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | || ||||| || || ||||| || || ||||| |||||||| ||||| || || Sbjct 206944 ACGACCGTCCTCAAGCTGTTTGCCAGCGAAGATGAGACGCTGTTGATCGGGAGGGATGCC 206885 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 |||||||||||||||||| || ||||| || ||| | || | | |||||| Sbjct 206884 CTCCTTGTCTTGAATCTTTCCCTTAACAGCCTCGATACTGTCGGAGGACTCGACTTCAAG 206825 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||| || || || |||||||| ||||||||||| || || Sbjct 206824 GGTGATGGTCTTGCCGGTGAGCGTCTTAACGAAGATCTG 206786 Score = 109 bits (120), Expect = 4e-18 Identities = 118/154 (77%), Gaps = 2/154 (1%) Strand=Plus/Minus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 ||||||||| ||||| || || || |||||||| ||||| || ||||| || || ||||| Sbjct 206656 ATCTTCAAGCTGCTTGCCGGCGAAGATAAGACGCTGTTGGTCGGGAGGGATGCCCTCCTT 206597 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAA 480735 ||||||||||| || || || |||||| |||||| | | | |||||||| | Sbjct 206596 ATCTTGAATCTTGCCCTTCACCGCCTCAATACTATCAGAAGACTCGA-CCTCAAGGGTGA 206538 Query 480736 TAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 |||| || |||||||||||||| || || || || Sbjct 206537 TAGTCTTGCCGGTGAGAGTCTTGACAAAGATCTG 206504 >seq54 Length=1324731 Score = 89.7 bits (98), Expect = 3e-12 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||||||||| || || ||||| ||| ||| || | ||| || || | || || Sbjct 967307 ACGAAGACGGAGGACGAGGTGAAGAGTAGATTCCTTCTGGATATTGTAGTCGGAGAGGGT 967248 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | || || || ||||| || || ||||||||||| || || || |||||||| || Sbjct 967247 CCGACCGTCCTCGAGCTGCTTGCCGGCGAAAATAAGACGCTGCTGGTCCGGAGGAATACC 967188 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG 480714 |||||||| |||||||| |||||| || || || | |||| Sbjct 967187 CTCCTTGTCCTGAATCTTGCCTTTGACGGCCTCGATGGAGTCAG 967144 Score = 87.8 bits (96), Expect = 1e-11 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| |||||||| ||||||||||| || || || || || || |||| ||||| Sbjct 967819 ACGGAGACGGAGGACAAGATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGAAAGAGT 967760 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | ||| || || ||||| ||||| || || ||||| || || || ||||| || || Sbjct 967759 ACGGCCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGAGGGATGCC 967700 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 |||||||| || |||||| || || || || || | |||| | | | || | Sbjct 967699 CTCCTTGTCCTGGATCTTTCCCTTCACGGCCTCGATGGAGTCAGAAGACTCGA-CCTCGA 967641 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || ||||| || ||||| | ||||| ||||| || || Sbjct 967640 GCGTGATAGTCTTTCCGGTCAAGGTCTTGACGAAGATCTG 967601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268165602331916