Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Irpex_20lacteus_20[genbank_20GCA_5F001986395.2_202017-07-10] 317 sequences; 44,362,654 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq215 122 7e-23 seq296 113 4e-20 >seq215 Length=105717 Score = 122 bits (134), Expect = 7e-23 Identities = 168/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 30187 CAGCTGATCCACCCCCATCCCCGAGTAGTC-TGCCCTCATGTCCGTGTACTCTGCTCCGA 30245 |||||||||||| ||| |||| || || | | || ||| |||| || || | Sbjct 68976 CAGCTGATCCACGCCCTCTCCCGTATAATCCTTGTCACAA-TCCTCATACTTCGCACCAA 68918 Query 30246 AATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTG-CTCGAAG 30304 |||| |||||||| ||||| ||||| ||||||| |||||||||| || || ||| || Sbjct 68917 AATGTCTCCACTGAAACCCATACACAGGTCCCAAGTCTCCCTCTCGTCTATGACTC-AAC 68859 Query 30305 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCA 30364 || | |||||||||||| || || || || || | ||||||||||| || ||||| || Sbjct 68858 CCTCGCTTGTCCAAAAACTCCCTAGAGCCATTTCCATCCCAGATCTTCACGCCCTTGGCA 68799 Query 30365 GAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTC 30414 || || || |||| || | |||||||| ||||| || ||||| || Sbjct 68798 GATAGAAGCTTAGAGTCCGTTGTACCTCTGACAAACCATAGGAGCTCTTC 68749 >seq296 Length=2232338 Score = 113 bits (124), Expect = 4e-20 Identities = 166/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 30187 CAGCTGATCCACCCCCATCCCCGAGTAGTC-TGCCCTCATGTCCGTGTACTCTGCTCCGA 30245 |||||||||||| ||| |||| || || | | || ||| |||| || || | Sbjct 1744280 CAGCTGATCCACGCCCTCTCCCGTATAATCCTTGTCACAA-TCCTCATACTTCGCACCAA 1744338 Query 30246 AATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTG-CTCGAAG 30304 |||| |||||||| ||||| ||||| ||||||| |||||||||| || || ||| || Sbjct 1744339 AATGTCTCCACTGAAACCCATACACAGGTCCCAAGTCTCCCTCTCGTCTATGACTC-AAC 1744397 Query 30305 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCA 30364 || | |||||||||||| || || || || || | ||||||||||| || ||||| || Sbjct 1744398 CCTCGCTTGTCCAAAAACTCCCTAGAGCCATTTCCATCCCAGATCTTCACGCCCTTGTCC 1744457 Query 30365 GAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTC 30414 || || || || | || | ||||| || |||||||| || || || Sbjct 1744458 GACAGAAGCTTAGAATCCGTCGCACCTCTAACAAACCACAGAAGTTCTTC 1744507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406308830245164