Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Irpex_20lacteus_20[genbank_20GCA_5F001986395.2_202017-07-10] 317 sequences; 44,362,654 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq215 113 3e-20 seq296 107 1e-18 >seq215 Length=105717 Score = 113 bits (124), Expect = 3e-20 Identities = 166/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 27453 CAGCTGATCCACCCCCATCCCCGAGTAGTC-TACCCTCATGTCCGTGTACTCTGCTCCGA 27511 |||||||||||| ||| |||| || || | | || ||| |||| || || | Sbjct 68976 CAGCTGATCCACGCCCTCTCCCGTATAATCCTTGTCACAA-TCCTCATACTTCGCACCAA 68918 Query 27512 AATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTG-CTCGAAG 27570 |||| ||||| || ||||| ||||| ||||||| |||||||||| || || ||| || Sbjct 68917 AATGTCTCCACTGAAACCCATACACAGGTCCCAAGTCTCCCTCTCGTCTATGACTC-AAC 68859 Query 27571 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 27630 || | |||||||||||| || || || || || | ||||||||||| || ||||| | Sbjct 68858 CCTCGCTTGTCCAAAAACTCCCTAGAGCCATTTCCATCCCAGATCTTCACGCCCTTGGCA 68799 Query 27631 GAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTC 27680 || || || |||| || | |||||||| ||||| || ||||| || Sbjct 68798 GATAGAAGCTTAGAGTCCGTTGTACCTCTGACAAACCATAGGAGCTCTTC 68749 >seq296 Length=2232338 Score = 107 bits (118), Expect = 1e-18 Identities = 165/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 27453 CAGCTGATCCACCCCCATCCCCGAGTAGTC-TACCCTCATGTCCGTGTACTCTGCTCCGA 27511 |||||||||||| ||| |||| || || | | || ||| |||| || || | Sbjct 1744280 CAGCTGATCCACGCCCTCTCCCGTATAATCCTTGTCACAA-TCCTCATACTTCGCACCAA 1744338 Query 27512 AATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTG-CTCGAAG 27570 |||| ||||| || ||||| ||||| ||||||| |||||||||| || || ||| || Sbjct 1744339 AATGTCTCCACTGAAACCCATACACAGGTCCCAAGTCTCCCTCTCGTCTATGACTC-AAC 1744397 Query 27571 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 27630 || | |||||||||||| || || || || || | ||||||||||| || ||||| || Sbjct 1744398 CCTCGCTTGTCCAAAAACTCCCTAGAGCCATTTCCATCCCAGATCTTCACGCCCTTGTCC 1744457 Query 27631 GAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTC 27680 || || || || | || | ||||| || |||||||| || || || Sbjct 1744458 GACAGAAGCTTAGAATCCGTCGCACCTCTAACAAACCACAGAAGTTCTTC 1744507 Score = 84.2 bits (92), Expect = 2e-11 Identities = 128/180 (71%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 27106 GGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAG 27165 || || || || ||||||||||| | ||| |||||||| || ||||| ||| |||| Sbjct 1743856 GGGAACGGCCTCGGCTCCCTCTCCAACTGTACCTTCAGCGCATCGACGTGGTCCCGGTAC 1743915 Query 27166 ACGTGAGCGTCTCCCAGGGTGT-GGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGC 27224 || || || || |||| | ||| || | ||| |||||| | ||||| | || Sbjct 1743916 ACATGCGCATCACCCA-GCTGTATGATCAGCTCGTGCGGTTCCGTATCTGTGACTTTGGC 1743974 Query 27225 CATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTC 27284 ||||||| |||||||| | |||| ||||||||| ||||| | ||||| || | ||| Sbjct 1743975 AATCATGTGTGTGAGGAGGGCGTAGGAGGCGATGTTGAAGGGGATGCCGAGGCCGAGGTC 1744034 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369505772432027