Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kockovaella_20imperatae_20[genbank_20GCA_5F002102565.1_202017-04-20] 38 sequences; 17,465,713 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq11 105 7e-18 >seq11 Length=169478 Score = 105 bits (116), Expect = 7e-18 Identities = 178/255 (70%), Gaps = 2/255 (1%) Strand=Plus/Minus Query 16184 AGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGT 16243 ||||| | |||| || || ||||||||| || ||||| || || || ||| ||| Sbjct 25134 AGGTGGGTGAACAGGAGGCAAGCGAAGTCGGTGTGGAGTCCCTCATCCCTAGAGATGAGT 25075 Query 16244 TCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA 16303 |||||||| || || | || ||||| || | ||||| | |||||| || | ||| Sbjct 25074 TCGTTGGAGAATGTGAGACCAGGCATGAGACCCCTCTTCTTAAGCCAGAAGATGGAGGCA 25015 Query 16304 AATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTAC 16363 || || || || ||||| ||||| ||||| | || || ||||| ||||| || ||| | Sbjct 25014 AACGAACCAGAGAAGAAAATACCTTCAACGGCGGCGAAGGCGATCAATCGCTCGGCGAAG 24955 Query 16364 GTAGCATC-TTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATC 16422 || | ||| ||| | | |||||||| || |||||| || || | || |||||| Sbjct 24954 GTCG-ATCGTTTGTCAGTGATCCATTTGAGTGCCCATTGAGCCTTCTTTTGGATACAAGG 24896 Query 16423 CATCGTTTCTATGGC 16437 || || || ||||| Sbjct 24895 GATGGTGTCAATGGC 24881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511414157078160