Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kockovaella_20imperatae_20[genbank_20GCA_5F002102565.1_202017-04-20] 38 sequences; 17,465,713 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq33 107 2e-18 >seq33 Length=1453386 Score = 107 bits (118), Expect = 2e-18 Identities = 631/1011 (62%), Gaps = 67/1011 (7%) Strand=Plus/Minus Query 53711 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAA 53770 || |||| || || ||||| ||||| | || | | | |||| || || || || || Sbjct 850792 GAGGCCAAGTTGCAGACGGCGACCTCGTCAGGAGCAGAGTATTCAATGATTTCGGTACAC 850733 Query 53771 AGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTT----TTTGTTACACGC 53826 | || | ||||||||||||| | | | ||| || ||| |||| || || Sbjct 850732 AAGTTGGAAGACTTGATGGTTCCCAGGTGCTTTTGGTTGGACTTGGCATTTG---CA-GC 850677 Query 53827 ATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCA 53886 |||||| ||||| ||| | || ||||| || || |||||| || | || || ||| Sbjct 850676 ATCCTTGTAAAGCATGTAGGGAGTACCGGTCTCGGTCTGGGCCTCAAGGATGGCGAACCA 850617 Query 53887 GACGACACGAGCCTTTATTATAGATTTGTATCT--CTTTTCTCTTTCGTATAGTGTATAC 53944 || ||||||| || | || | || | || ||||||| | ||| Sbjct 850616 GAGTTTCTGAGCCTTGATGGTCT-TTCGGCCCTTGCCGGCCT-TTTCGTAGCCTTCATAG 850559 Query 53945 AATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATC 54004 | | |||||| ||| |||| |||| | | | ||||| ||||| | |||||||| Sbjct 850558 AGTGCTTCAAATTCGGCTCCATGGACATCGGCGAGACCAGGGCATTCGGCAGGACACATG 850499 Query 54005 AACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC- 54063 | | ||| || ||||| | | ||||| ||||| || || || || ||||| || || Sbjct 850498 AGGGTCCAGTCACCGTCGGCTTCGACTCGCTTCATGAACAGGTCGGGTATCCAGAGGGCG 850439 Query 54064 TATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAA 54123 || ||| ||||| | || || || || || || ||||||| | |||||||| Sbjct 850438 TAGAAA-AGATCACGGGCTCGGACCTCTTCCTTACCGTGATTCTTTCGCAAGTCGAGGAA 850380 Query 54124 CGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTT 54183 | | | ||| | ||||| || || | || |||| | | ||||| || ||||| Sbjct 850379 GTCAAAGACATCGGCGTGCCAGGGCTCTAGATAGATGGCAAAGGCACCAGGACGCTTGTT 850320 Query 54184 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 54243 ||| ||||| || | ||| | ||||||| | | | ||| | ||| || | ||||| Sbjct 850319 TCCACCCTGGTCGACGTAACGAGCGGTGGCGTCAAAGGCTCGGAGCATAGGTACGATACC 850260 Query 54244 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAAT-TG 54302 || || || ||||| |||| || ||| || |||| ||||| || ||| || Sbjct 850259 GTTCGAGTATCCGTTGGTACCGGCAATGTAGGAGCCCTTGGCTCGAATGTTGTGAATGTG 850200 Query 54303 ATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGA 54362 | || || || || || || | || ||||| ||||| || || || || |||| Sbjct 850199 A-AGTCCGATACCTCCGGCAGTCTTGGAGATCTGAGCGCAGGTCTTCAAAGTCTCGTAGA 850141 Query 54363 TGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAC 54422 |||| || || || || |||| | || || ||| |||||||| | || Sbjct 850140 TGCCGTCAATGGAGTCGTCTCGCATGGCGACAAGGAAGCAGGAGGACATTTGAGGGTGAG 850081 Query 54423 TAGTTCCCGCATTAAATA--------------------AGGTA----------------- 54445 |||||| || || || | ||| | Sbjct 850080 GAGTTCCGGCGTTGAACAGCTGACAATTGGGTTAGACTAGGGACTTGACTCGGCCTGACA 850021 Query 54446 ------------GGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCG 54493 || || ||||| ||||| || || || | || ||||| || || Sbjct 850020 ACACTTACTGTGGGCGAGGCGTGGGTAAAATATCGCTCCGACATGAGGTTGTATGTTTCA 849961 Query 54494 ATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTG 54552 || || || | ||| || | |||||||| || || |||||||| | |||||| || Sbjct 849960 ATGGCACGATCGACATCGGCACCG-TGAATTCCGACGGCCACACGCATGATCATGTGTTG 849902 Query 54553 AGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAA 54612 ||||| |||||| ||||| || ||| |||||||||||| ||| | ||| || || Sbjct 849901 AGGTCGTTCAACAATCTTTCCATTGATTCGGAGCAAGTAGGATCGTTCAAGAGTCTTGAA 849842 Query 54613 ACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAG 54663 ||||| || ||||| | || || || ||||| ||||| || |||| ||| Sbjct 849841 CCCAAAGTAATTGTAGGCGAAATCACGGTCGTAGATAATGACCGAGTCGAG 849791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593721317982240