Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kockovaella_20imperatae_20[genbank_20GCA_5F002102565.1_202017-04-20] 38 sequences; 17,465,713 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq11 132 5e-26 seq12 102 8e-17 seq37 89.7 5e-13 >seq11 Length=169478 Score = 132 bits (146), Expect = 5e-26 Identities = 157/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || | || ||||||||||||||| |||| ||||| || || Sbjct 10412 ATGCAAATCTTCGTCAAGACTTTGACCGGCAAAACCATCACCCTCGAAGTCGAGTCCTCC 10353 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| | ||| || |||| ||||| ||||| || || | || || Sbjct 10352 GATACCATTGACAACG-TGAAGAGCAAGATTCAGGACAAGGAGGGTATTCCTCCTGATCA 10294 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || |||||||| | ||| || ||||| || || |||| || |||||| ||||||||| Sbjct 10293 ACAGCGACTCATTTTCGCTGGTAAACAACTCGAAGACGGACGAACCCTCTCCGACTACAA 10234 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| | || || ||||| || Sbjct 10233 CATCCAGAAGGAATCAACCCTTCATCTCGT 10204 Score = 95.1 bits (104), Expect = 1e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 40711 CTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAG 40770 ||||| || || || |||||| |||| |||||| || | || | | | | |||| Sbjct 9569 CTCACTGGTAAGACGATCACCCTCGAAGTCGAATCCTCAGATACTATCGACAATGTCAAA 9510 Query 40771 GAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGC 40830 || || | ||||| || |||||||| | |||||||| || | |||| ||| || Sbjct 9509 TCTAAGATCCAGGACAAGGAAGGCATCCCACCCGACCAGCAGCGGTTGATCTTCGCTGGA 9450 Query 40831 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTG 40890 || |||||||| || | ||||| |||| |||||||||||||| |||||| | || || Sbjct 9449 AAGCAGCTGGAAGATGGACGCACGCTCAGTGACTACAACATCCAAAAGGAGTCTACCTTG 9390 Query 40891 CA 40892 || Sbjct 9389 CA 9388 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || | || ||||| |||||||| | || || || | || Sbjct 10184 ATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACTTTGGAAGTTGAGTCATCC 10125 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | || || |||| ||||| ||||| || || | || || Sbjct 10124 GACACCATCGACAATGTGAAAAGCAAGATTCAGGACAAGGAGGGTATTCCTCCTGATCAA 10065 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || |||||||| | ||| || ||||| || || || | || || ||| |||||||||| Sbjct 10064 CAGCGACTCATTTTCGCCGGTAAACAACTCGAGGATGGACGTACACTCTCCGACTACAAC 10005 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 |||||||||||| | ||| ||||| | ||| Sbjct 10004 ATCCAGAAGGAGTCTACGTTGCATTTGGTG 9975 >seq12 Length=1921170 Score = 102 bits (112), Expect = 8e-17 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 40711 CTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAG 40770 ||||||||||| |||||||| |||| || ||| || | |||| | | | ||||| Sbjct 1262233 CTCACGGGCAAGACCATCACGCTCGAGGTTGAATCCTCTGACACTATCGACAATGTCAAG 1262174 Query 40771 GAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGC 40830 || || | ||||| || || || ||| | || || |||||| | |||| || || Sbjct 1262173 TCTAAGATCCAGGACAAGGAAGGAATTCCCCCTGATCAACAACGATTGATCTTTGCTGGA 1262114 Query 40831 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTG 40890 || ||| |||| || | || || ||| |||||||||||||||||||||| | || || Sbjct 1262113 AAGCAGTTGGAAGATGGACGAACTCTCTCCGACTACAACATCCAGAAGGAGTCTACTCTT 1262054 Query 40891 CATCTAGTGTTGCGCTTGAGGGGCGG 40916 || || || ||| | ||| | || || Sbjct 1262053 CACCTCGTCTTGAGATTGCGAGGAGG 1262028 >seq37 Length=816703 Score = 89.7 bits (98), Expect = 5e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 117027 CCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTT 117086 ||||| ||| || ||||| || || || || || ||| | ||||| || ||||| | Sbjct 353442 CCTTCCGCGTTCGACTGGTCGCTTTTGCTTGTGTGGAAGGCATATTCTTCTCTGGCAGCT 353501 Query 117087 TCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACG 117146 | || || || || ||||| ||||| | || |||||||| ||| |||||||| ||||| Sbjct 353502 TTGCGGCTATTTTCTGGCTGAAGAAGAGGGGTCTCATGCCTGGCTTGACTTTCTCCAACG 353561 Query 117147 AGCTCATCTCCAGGGACGAGGG 117168 |||||||| | |||| || || Sbjct 353562 AGCTCATCAGCCGGGATGAAGG 353583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515218955270880