Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kockovaella_20imperatae_20[genbank_20GCA_5F002102565.1_202017-04-20] 38 sequences; 17,465,713 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq11 102 9e-17 >seq11 Length=169478 Score = 102 bits (112), Expect = 9e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||||| || | | |||||||||||| || |||||| || || ||||| || | Sbjct 9958 CCTCCTCGCAACCTGAGCACCAAATGCAACGTAGACTCCTTCTGGATGTTGTAGTCGGAG 10017 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || || | || || || || ||||| ||||| ||||||||||| || || | || Sbjct 10018 AGTGTACGTCCATCCTCGAGTTGTTTACCGGCGAAAATGAGTCGCTGTTGATCAGGAGGA 10077 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 43135 | | |||||||||| ||| | || ||| | | | | | |||||| || || || Sbjct 10078 ATACCCTCCTTGTCC-TGAATCTTGCTTTTCACATTGTCGATGGTGTCGGATGACTCAAC 10136 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | |||||||| ||||| || | ||||| |||||||| ||||| Sbjct 10137 TTCCAAAGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 10184 Score = 96.9 bits (106), Expect = 4e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| || || ||||| || | || || || |||| || || || ||||||||||| Sbjct 10222 TCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGTCCGTCTTCGAGTTGTTTACCAGCGAAA 10281 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 ||||||||||| || || | || | | |||||||||| ||| | || | | ||| Sbjct 10282 ATGAGTCGCTGTTGATCAGGAGGAATACCCTCCTTGTCC-TGAATCTTGCTCTTCACGTT 10340 Query 43113 G-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | || ||| || || || |||| |||||||||||||| || | ||||| || Sbjct 10341 GTCAATGGTATCGGAGGACTCGACTTCGAGGGTGATGGTTTTGCCGGTCAAAGTCTTGAC 10400 Query 43172 AAAGATTTGCAT 43183 ||||||||||| Sbjct 10401 GAAGATTTGCAT 10412 Score = 84.2 bits (92), Expect = 3e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 |||||| ||||| || ||||||||| || ||||| ||| || || || | || || Sbjct 9381 CACCAAGTGCAAGGTAGACTCCTTTTGGATGTTGTAGTCACTGAGCGTGCGTCCATCTTC 9440 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 |||||||| |||||||| || | ||||||||||||| || | || ||||||||| Sbjct 9441 CAGCTGCTTTCCAGCGAAGATCAACCGCTGCTGGTCGGGTGGGATGCCTTCCTTGTCCTG 9500 Query 43094 GATTTTTTGTTTGA 43107 ||| || ||||| Sbjct 9501 GATCTTAGATTTGA 9514 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571817328386640