Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kockovaella_20imperatae_20[genbank_20GCA_5F002102565.1_202017-04-20] 38 sequences; 17,465,713 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq33 176 1e-38 >seq33 Length=1453386 Score = 176 bits (194), Expect = 1e-38 Identities = 490/738 (66%), Gaps = 24/738 (3%) Strand=Plus/Plus Query 249003 GCTCTTCAACGCCGGTAC-CGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGC 249061 ||| ||||||||||| || | ||| | ||| || ||| ||||| ||| | ||||||| Sbjct 850061 GCTGTTCAACGCCGGAACTCCTCACCC-TCAAATGTCCTCCTGCTTCCTTGTCGCCATGC 850119 Query 249062 AAGACGACTCTGTCGACGGCATTTATGACACGCTTAA-ACAGACGGCGAAGATTTCTAAA 249120 ||||||||| | |||||||| || || || | || || || | |||| || || Sbjct 850120 GAGACGACTCCATTGACGGCATCTACGAGACTTTGAAGACCTGCG-CTCAGATCTCCAAG 850178 Query 249121 TTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACATCAAA 249180 || || || ||||| || | | |||||| ||||| ||||| || ||||| Sbjct 850179 ACTGCCGGAGGTATCGGACTTCACATTCACAACATTCGAGCCAAGGGCTCCTACATTGCC 850238 Query 249181 GGTACAAATGGGGTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGTCCACCGCC 249240 ||||| || || | | ||||||||||| | || ||| |||||| ||||||| Sbjct 850239 GGTACCAACGGATACTCGAACGGTATCGTACCTATGCTCCGAGCCTTTGACGCCACCGCT 850298 Query 249241 AGGTTCATCAACCAGGCCGGGCGC---CGAAAGGGGTCGTTCGCCATGTATTTGGAAGTG 249297 | | | || |||||| || | || || | || ||||| ||| | || Sbjct 850299 CGTTACGTCGACCAGGGTGGAAACAAGCGTCCTGGTGCCTTTGCCATCTATCTAGAGCCC 850358 Query 249298 TGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGAGCTCATG 249357 |||||||||||| | || || ||||| |||||| |||||| |||| || || | Sbjct 850359 TGGCACGCCGATGTCTTTGACTTCCTCGACTTGCGAAAGAATCACGGTAAGGAAGAGGTC 850418 Query 249358 AGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATGCGCCGCGTCAAG 249417 |||| ||||| || ||||||| ||| ||| | ||||| |||||||| || ||| | Sbjct 850419 CGAGCCCGTGATCTTTTCTACGCCCTCTGGATACCCGACCTGTTCATGAAGCGAGTCGAA 850478 Query 249418 GCCGACGGCGATTGGACGCTTCTTTCTCCGTCCGACGCCCCGGACCTCATCGATCTACAC 249477 |||||||| || ||||| || | | ||| |||| ||| | ||| |||| | || Sbjct 850479 GCCGACGGTGACTGGACCCTCATGTGTCCTGCCGAATGCCCTGGTCTCGCCGATGTCCAT 850538 Query 249478 GGCGCCGACTTCGACCAAGC-CTATAAGAA--ATACGAATCCAACGGCATCGGC---AAG 249531 || ||||| || | |||| || || ||| |||||| ||||| ||| ||| Sbjct 850539 GGAGCCGAATTTG---AAGCACTCTATGAAGGCTACGAAAAGGCCGGCAAGGGCCGAAAG 850595 Query 249532 ACAATCAAGGCTCGGACCCT---TTTTGCGAAGGTGGTGGAGTCCCAGATAGAGACAGGG 249588 || |||||||||| || || || || | | | ||| |||||| ||||| || Sbjct 850596 ACCATCAAGGCTCAGAAACTCTGGTTCGCCA---TCCTTGAGGCCCAGACCGAGACCGGT 850652 Query 249589 GGGCCGTATTATTTGTTCAAAGACGCGTGC-AACGCCAAGAGTAACCAACGGCATCTTGG 249647 || || | | ||| || || ||| || |||||| |||||| ||| || || Sbjct 850653 ACTCCCTACATGCTTTACAAGGATGC-TGCAAATGCCAAGTCCAACCAAAAGCACCTGGG 850711 Query 249648 TACCATCCGCTCGTCAAATCTCTGTGCAGAGGTGATTCAATACTCGTCCAAGGAGGAGAT 249707 |||||| || || || | ||| | || | ||| ||||||| | || ||| | Sbjct 850712 AACCATCAAGTCTTCCAACTTGTGTACCGAAATCATTGAATACTCTGCTCCTGACGAGGT 850771 Query 249708 TGCCGTCTGCAACCTGGC 249725 |||||||||||| |||| Sbjct 850772 CGCCGTCTGCAACTTGGC 850789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073765877209984