Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kockovaella_20imperatae_20[genbank_20GCA_5F002102565.1_202017-04-20] 38 sequences; 17,465,713 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq11 122 7e-23 >seq11 Length=169478 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || |||| ||| || | ||||| |||| ||| ||||||||| |||||||||||| Sbjct 9958 CCTCCTCGCAACCTGAGCACCAAATGCAACGTAGACTCCTTCTGGATGTTGTAGTCGGAG 10017 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 ||| || | || || |||||||| |||||||| || | |||||||| || ||||| Sbjct 10018 AGTGTACGTCCATCCTCGAGTTGTTTACCGGCGAAAATGAGTCGCTGTTGATCAGGAGGA 10077 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||||||||||||| ||| || || || | | | |||| ||| || Sbjct 10078 ATACCCTCCTTGTCCTGAATCTTGCTTTTCACATTGTCGATGGTGTCGGATGACTCAACT 10137 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| || || |||||||| |||| |||||||||||||| ||||| Sbjct 10138 TCCAAAGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 10184 Score = 89.7 bits (98), Expect = 4e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||||| || |||||| || ||||||||||| | || ||| | || ||| Sbjct 9382 ACCAAGTGCAAGGTAGACTCCTTTTGGATGTTGTAGTCACTGAGCGTGCGTCCATCTTCC 9441 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 || || ||||| ||||| ||||||||||| |||||||| || | || ||||||||| Sbjct 9442 AGCTGCTTTCCAGCGAAGATCAACCGCTGCTGGTCGGGTGGGATGCCTTCCTTGTCC 9498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395075017030798