Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kockovaella_20imperatae_20[genbank_20GCA_5F002102565.1_202017-04-20] 38 sequences; 17,465,713 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq33 230 2e-55 seq11 96.9 3e-15 seq12 82.4 7e-11 >seq33 Length=1453386 Score = 230 bits (254), Expect = 2e-55 Identities = 486/715 (68%), Gaps = 10/715 (1%) Strand=Plus/Minus Query 23021 GCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCG 23080 |||| |||||| | ||||| ||||| |||||||| | | ||| || | |||||| Sbjct 850798 GCGAGCGAGGCCAAGTTGCAGACGGCGACCTCGTCAGGAGCAGAGTATTCAATGATTTCG 850739 Query 23081 GTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATT-GCA 23139 ||||| | ||| | |||| || || |||| | | |||||| || ||| ||| Sbjct 850738 GTACACAAGTTGGAAGACTTGATGGTTCCCAGGTGCTTTTGGTTGGACTTGGCATTTGCA 850679 Query 23140 CGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCG 23199 | ||||||||| |||||||| || || || |||||| ||| | ||| | ||| || Sbjct 850678 -GCATCCTTGTAAAGCATGTAGGGAGTACCGGTCTCGGTCTGGGCCTCAAGGATGGCGAA 850620 Query 23200 CCACATAGTCTGAGCGTGAACACGTCGCACGTACCT-GCCTTCTTCCTCGTACTTTTGGT 23258 ||| | ||||||| | | ||| || ||| ||| | | ||||| || | Sbjct 850619 CCAGAGTTTCTGAGCCTTGATG-GTCTTTCGGCCCTTGCCGGCCTTTTCGTAGCCTTCAT 850561 Query 23259 ACAACGCGTCAAATTCGGCACCGTA-ACAGTCGGCCAGGCCGGGCGATT--GCATCGGAC 23315 | | || ||||||||||| || | ||| ||||| || || || ||| ||| |||| Sbjct 850560 AGAGTGCTTCAAATTCGGCTCCATGGACA-TCGGCGAGACCAGGGCATTCGGCA--GGAC 850504 Query 23316 ACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATA 23375 ||||||| |||| ||| ||| || || |||| || || || |||||||| | Sbjct 850503 ACATGAGGGTCCAGTCACCGTCGGCTTCGACTCGCTTCATGAACAGGTCGGGTATCCAGA 850444 Query 23376 GAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCA 23435 | |||||||| || || ||||| || ||||| || || ||| |||||| ||| || | Sbjct 850443 GGGCGTAGAAAAGATCACGGGCTCGGACCTCTTCCTTACCGTGATTCTTTCGCAAGTCGA 850384 Query 23436 AAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCT 23495 ||||| || || || || ||||| ||||| || || | |||||| || || || | || Sbjct 850383 GGAAGTCAAAGACATCGGCGTGCCAGGGCTCTAGATAGATGGCAAAGGCACCAGGACGCT 850324 Query 23496 TATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGA 23555 | || || ||||| ||||||||||| || ||| || | ||| ||||| || |||| Sbjct 850323 TGTTTCCACCCTGGTCGACGTAACGAGCGGTGGCGTCAAAGGCTCGGAGCATAGGTACGA 850264 Query 23556 GACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAA 23615 |||||| || ||| || || | || || || ||||||| |||||||| Sbjct 850263 TACCGTTCGAGTATCCGTTGGTACCGGCAATGTAGGAGCCCTTGGCTCGAATGTTGTGAA 850204 Query 23616 CGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGT 23675 ||| | || || |||||| | | || || ||| ||||| |||| ||| |||| Sbjct 850203 TGTGAAGTCCGATACCTCCGGCAGTCTTGGAGATCTGAGCGCAGGTCTTCAAAGTCTCGT 850144 Query 23676 AGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTG 23730 ||||||| || ||| ||| ||| | ||||| | ||| || || |||||||| Sbjct 850143 AGATGCCGTCAATGGAGTCGTCTCGCATGGCGACAAGGAAGCAGGAGGACATTTG 850089 >seq11 Length=169478 Score = 96.9 bits (106), Expect = 3e-15 Identities = 226/337 (67%), Gaps = 8/337 (2%) Strand=Plus/Plus Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGAC 57866 || ||| | || || |||| || || || |||||||| || ||| | || ||| | || Sbjct 24800 GAGAACATCCACTCTGAAACCTACTCCCTCCTCATCGACACCTACATCAAAGACGCCAAC 24859 Query 57867 GAGAAACGTAGA---CTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCA 57923 | || | | || ||| | || || || || || || ||| |||||||| Sbjct 24860 CAC---CGCACATTCCTCTTCGAAGCCATTGACACCATCCCTTGTATCCAAAAGAAGGCT 24916 Query 57924 GAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCC-ACGTTCGCCGAGAGGCTAATCGC 57982 | ||| || |||||||||| | | ||| | || ||||||||| | | ||||| Sbjct 24917 CAATGGGCACTCAAATGGATCACTGACAA-ACGATCGACCTTCGCCGAGCGATTGATCGC 24975 Query 57983 GTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAA 58042 ||||||||||| |||||||| ||||| || || ||||| | || || ||| | || Sbjct 24976 CTTCGCCGCCGTTGAAGGTATTTTCTTCTCTGGTTCGTTTGCCTCCATCTTCTGGCTTAA 25035 Query 58043 GAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGG 58102 ||| | || || ||||| || || || || |||||| | || || | || ||||| Sbjct 25036 GAAGAGGGGTCTCATGCCTGGTCTCACATTCTCCAACGAACTCATCTCTAGGGATGAGGG 25095 Query 58103 TCTCCATACTGATTTTGCGTGCCTAATGTACTCTCAC 58139 ||||| || || || || ||||| ||| | | ||| Sbjct 25096 ACTCCACACCGACTTCGCTTGCCTCCTGTTCACCCAC 25132 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/194 (72%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 31213 TCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGGTCAA 31272 ||| || || || ||||||||| |||| || ||| | || || | | |||| | ||||| Sbjct 9570 TCTCACTGGTAAGACGATCACCCTCGAAGTCGAATCCTCAGATACTATCGACAATGTCAA 9511 Query 31273 ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGG 31332 | | || ||||||||||||| | || |||||||||||||| | || |||||||| Sbjct 9510 ATCTAAGATCCAGGACAAGGAAGGCATCCCACCCGACCAGCAGCGGTTGATCTTCGCTGG 9451 Query 31333 CAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAACATTCAAAAAGAATCGACTC 31391 || ||| ||||||| | | | || | || || || ||||| ||||| || || || Sbjct 9450 AAAGCAGCTGGAAGA-TGGACGCACGCTCAGTGACTACAACATCCAAAAGGAGTCTACCT 9392 Query 31392 TTCATCTGGTACTT 31405 | || |||| ||| Sbjct 9391 TGCACTTGGTGCTT 9378 >seq12 Length=1921170 Score = 82.4 bits (90), Expect = 7e-11 Identities = 145/209 (69%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 31214 CTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGGTCAAA 31273 || || ||||| || ||||| |||| |||||| | || |||| | |||| | ||||| Sbjct 1262233 CTCACGGGCAAGACCATCACGCTCGAGGTTGAATCCTCTGACACTATCGACAATGTCAAG 1262174 Query 31274 CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGC 31333 | || |||||||||||| | || || || || || || | || || ||||| Sbjct 1262173 TCTAAGATCCAGGACAAGGAAGGAATTCCCCCTGATCAACAACGATTGATCTTTGCTGGA 1262114 Query 31334 AAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAACATTCAAAAAGAATCGACTCT 31392 || ||||||||||| | | | ||| | ||| || ||||| || || || || ||||| Sbjct 1262113 AAGCAGTTGGAAGA-TGGACGAACTCTCTCCGACTACAACATCCAGAAGGAGTCTACTCT 1262055 Query 31393 TCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||| || || | ||| || | || |||| Sbjct 1262054 TCACCTCGTCTTGAGATTGCGAGGAGGTA 1262026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766188260960