Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kockovaella_20imperatae_20[genbank_20GCA_5F002102565.1_202017-04-20] 38 sequences; 17,465,713 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq11 113 9e-20 seq33 100 6e-16 >seq11 Length=169478 Score = 113 bits (124), Expect = 9e-20 Identities = 116/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 101921 GCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGGATC 101980 ||||| || || |||||||| || ||||| |||| | || || ||||| |||||| | Sbjct 24974 GCCTTCGCCGCCGTTGAAGGTATTTTCTTCTCTGGTTCGTTTGCCTCCATCTTCTGGCTT 25033 Query 101981 AAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGACGAA 102040 ||||| |||||| | ||||||||||||| | |||||| || |||| |||||||| || Sbjct 25034 AAGAAGAGGGGTCTCATGCCTGGTCTCACATTCTCCAACGAACTCATCTCTAGGGATGAG 25093 Query 102041 GGTCTTCATCGCGACTTTGCATGCATGCTGTT 102072 || || || |||||| || ||| | ||||| Sbjct 25094 GGACTCCACACCGACTTCGCTTGCCTCCTGTT 25125 >seq33 Length=1453386 Score = 100 bits (110), Expect = 6e-16 Identities = 96/123 (78%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 94920 TGTGGGGGAAGCATGGGTAAAATAGTGCCTCGACATGAGATCATATGTTTCAATGACAGA 94979 |||||| || || ||||||||||| || ||||||||| | |||||||||||| || Sbjct 850012 TGTGGGCGAGGCGTGGGTAAAATATCGCTCCGACATGAGGTTGTATGTTTCAATGGCACG 849953 Query 94980 TTTGATGTCTGATCCGTGAATGCCGACAGCCACACGCATAATCATGTCCTGAGGGCGCTC 95039 | || || | |||||||| ||||| ||||||||||| ||||||| ||||| || || Sbjct 849952 ATCGACATCGGCACCGTGAATTCCGACGGCCACACGCATGATCATGTGTTGAGGTCGTTC 849893 Query 95040 AAC 95042 ||| Sbjct 849892 AAC 849890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989583518196290